1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGTGCTTCTTACACATGCCTTTGTACAAAATTTGCATGATCAAGATGTTCAAGTTCATTCCCAAGGGCAAAACTGTCCCAGAGGAGACCCTGGACCAGGAgtaagtgctaattatattttgaactccttggtaatggaccattgtcaatttgtcatggtccaaggagatcaatcattatgaattataaaccacccttact...
species | Glycine max |
transcript | GLYMA06G03970.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AAGTTCATTCCCAAGGGCAAAACTGTCCCAGAGGAGACCCTGGACCAGGA GATGATTCACGTAGACATAGCCCCGGTAACAGTTCAAGAAATAGCCGTGGTEST: gi|21889779|gb|BQ742992.1|BQ742992
genomic: AAGTTCATTCCCAAGGGCAAAACTGTCCCAGAGGAGACCCTGGACCAGGAgtaagtgcta ... tgctttgtagGATGATTCACGTAGACATAGCCCCGGTAACAGTTCAAGAAATAGCCGTGGT
EST: AAGTTCATTCCCAAGGGCAAAACTGTCCCAGAGGAGACCCTGGACCAGGA GATGATTCACGTAGACATAGCCCCGGTAACAGTTCAAGAAATAGCCGTGGTEST: gi|22933522|gb|BU550661.1|BU550661
genomic: AAGTTCATTCCCAAGGGCAAAACTGTCCCAGAGGAGACCCTGGACCAGGAgtaagtgcta ... tgctttgtagGATGATTCACGTAGACATAGCCCCGGTAACAGTTCAAGAAATAGCCGTGGT
EST: AAGTTCATTCCCAAGGGCAAAACTGTCCCAGAGGAGACCCTGGACCAGGA GATGATTCACGTAGACATAGCCCCGGTAACAGTTCAAGAAATAGCCGTGGTEST: gi|151399302|gb|EV269173.1|EV269173
genomic: AAGTTCATTCCCAAGGGCAAAACTGTCCCAGAGGAGACCCTGGACCAGGAgtaagtgcta ... tgctttgtagGATGATTCACGTAGACATAGCCCCGGTAACAGTTCAAGAAATAGCCGTGGT
EST: AAGTTCATTCCCAAGGGCAAAACTGTCCCAGAGGAGACCCTGGACCAGGA GATGATTCACGTAGACATAGCCCCGGTAACAGTTCA-GAA-TAGCCGTGGT
genomic: AAGTTCATTCCCAAGGGCAAAACTGTCCCAGAGGAGACCCTGGACCAGGAgtaagtgcta ... tgctttgtagGATGATTCACGTAGACATAGCCCCGGTAACAGTTCAAGAAATAGCCGTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGCTTCTTACACATGCCTTTGTACAAAATTTGCATGATCAAGATGTTCAAGTTCATTCCCAAGGGCAAAACTGTCCCAGAGGAGACCCTGGACCAGGAgtaagtgctaattatattttgaactccttggtaatggaccattgtcaatttgtcatggtccaaggagatcaatcattatgaattataaaccacccttact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaccct