Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCATATGCACAGCAGTTTCATTCCTTGCAACTGTACCTTTGGGAGAGTTATTCTTTTTCCATATGATCCTGATACGAAAGgtatattcatgaacttttcctcctatcgacatatatattctaagctgtctttttcttttacag

Basic information

species Glycine max
transcript GLYMA06G01810.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G01810.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv18s0122g00920.t01 (Vitis vinifera), 5'ss of exon 8
GCCATATGCACAGCAGTTTCATTCCTTGCAACTGTACCTTTGGGAGAGTTATTCTTTTTCCATATGATCCTGATACGAAAGgtatattcatgaacttttcct-cctatcgacatatatattctaagctgtctttttcttttacag----------------------------
||| | || ||||| |||||||| || || || || |||||||| ||  ||||||||||||| ||||| ||||| ||||||||  |||| |||| |  | ||  |||||           || || || | ||     | |  |                             
GCCCTTTGTACAGCTGTTTCATTGCTGGCCACAGTCCCTTTGGGGGAACTATTCTTTTTCCACATGATTCTGATGCGAAAGgtgcattcctgaaatgctgctgtctatct---ctccccctccaaactattttaaatatctgaaacatgaaaaattatgctcttttgctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193708040|gb|FK648086.1|FK648086
EST:     CTGTACCTTTGGGAGAGTTATTCTTTTTCCATATGATCCTGATACGAAAG                         GGTATCACAACTTACGAGTATGTTGTGGCCATGCGAACTCTAAGTGAACCA
genomic: CTGTACCTTTGGGAGAGTTATTCTTTTTCCATATGATCCTGATACGAAAGgtatattcat ... tcttttacagGGTATCACAACTTACGAGTATGTTGTGGCCATGCGAACTCTAAGTGAACCA