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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGAGCAATATGTTGATTATGCTCTTGATGTTCCTATGTATTTTGTCTATCGGAAAAACAGATATATCGACTGCACTGGAAAGACCTTCAGGgttcccatctatctttaatattcttgtaatttaaggatatctattctagccctgccattctttattgtgaaacttactttgcttgaccacactatacatgtagtcttgatttgctcaatgtagagaattggttatttttttattgcag

Basic information

species Glycine max
transcript GLYMA05G37850.3
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G37850.3 (Glycine max), 5'ss of exon 10
lower sequence: Vv02s0025g03530.t01 (Vitis vinifera), 5'ss of exon 10
GTTTGAGCAATATGTTGATTATGCTCTTGATGTTCCTATGTATTTTGTCTATCGGAAAAACAGATATATCGACTGCACTGGAAAGACCTTCAGGgttcccatctatctttaatattcttgta----atttaaggatatctattctagccctgccattctttattgtgaaactt-actttgcttgaccacactatacatgtagtcttgatttg---ctcaatgtagagaattggttatttttttattgcag
 |||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||| || |  ||||| ||||| ||||||| | ||||| ||||| ||||||| | |||||| |||||||    ||||   | | |||    ||||| |||  |||||| || | | | || | ||| ||||| || | | | ||| | |   |  ||||   |  |||       ||  |||| || || |      
ATTTGAGCAGTATGTAGATTATGCTCTTGATGTTCCAATGTACTTTGTCTATCGGAAGAAGAAGTATATTGACTGTACTGGAATGTCCTTCCGGgtttccatctaaccttaatactcttgtacttgattttgtgctttcttcattagccatgctcttctttgttctaagattttatttttcttgatcataatcttcatcttgagcttttttggaacataatacttgtcatatgttacttcttcag-----

upper sequence: GLYMA05G37850.3 (Glycine max), 5'ss of exon 10
lower sequence: PP1S479_14V6.1 (Physcomitrella patens), 5'ss of exon 9
GTTTGAGCAATATGTTGATTATGCTCTTGATGTTCCTATGTATTTTGTCTATCGGAAAAACAGATATATCGACTGCACTGGAAAGACCTTCAGGgt--tcccatctatctttaatattcttgtaatttaaggatatctattctagccctgccattctttattgtgaaacttactttgcttgaccacactatacatgtagt-cttgatttgctcaa----------tgtagagaattggttattttttta--ttgcag---------------
||| ||  | || |||||||||||||| || |||||||||||||||||||| || ||     | ||  | |||||  ||||   | | || | |||  |    | |  |          ||   ||   | |   |  |||       |   || |   |||      |  | |||  || | ||         |||| | |||    | |  ||          | ||| | |    | ||||  | |  ||| ||               
GTTCGAAAAGTACGTTGATTATGCTCTAGACGTTCCTATGTATTTTGTCTACCGTAACGGTCGGTACGTTGACTGTTCTGGTCTGTCATTTAAGgtaatttactttgccacagcaggctttagcatgacaaggcgttcattgctagtttattatacacgattagattgccaatttt--ttaatcatctgtgttgtgtaatgcttcggctaccgaagtttcgggtctttagggcacaaatcatttcatcaacttggagcattgtattttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12691343|gb|BG157679.1|BG157679
EST:     AAGACCTTCAGG                         GACTTTTTGGCTGGAAGACTTCCTTGTATCCCTGGTGAATTACCAACTCTC
genomic: AAGACCTTCAGGgttcccatct ... tttattgcagGACTTTTTGGCTGGAAGACTTCCTTGTATCCCTGGTGAATTACCAACTCTC
EST: gi|13480024|gb|BG509367.1|BG509367
EST:     TTGTCTATCGGAAAAACAGATATATCGACTGCACTGGAAAGACCTTCAGG                         GACTTTTTGGCTGGAAGACTTCCTTGTATCCCTGGTGAATTACCAACTCTC
genomic: TTGTCTATCGGAAAAACAGATATATCGACTGCACTGGAAAGACCTTCAGGgttcccatct ... tttattgcagGACTTTTTGGCTGGAAGACTTCCTTGTATCCCTGGTGAATTACCAACTCTC
EST: gi|9900602|gb|BE609570.1|BE609570
EST:     CACTGGAAAGACCTTCAGG                         GACTTTTTGGCTGGAAGACTTCCTTGTATCCCTGGTGAATTACCAACTCTC
genomic: CACTGGAAAGACCTTCAGGgttcccatct ... tttattgcagGACTTTTTGGCTGGAAGACTTCCTTGTATCCCTGGTGAATTACCAACTCTC
EST: gi|193446481|gb|FK415812.1|FK415812
EST:     TTGTCTATCGGAAAAACAGATATATCGACTGCACTGGAAAGACCTTCAGG                         GACTTTTTGGTCTCGGAAGACTTCCTTGTAT
genomic: TTGTCTATCGGAAAAACAGATATATCGACTGCACTGGAAAGACCTTCAGGgttcccatct ... tttattgcagGACTTTTTGG-CT-GGAAGACTTCCTTGTAT
EST: gi|19453403|gb|BM954813.1|BM954813
EST:     TTGTCTATCGGAAAAACAGATATATCGACTGCACTGGAAAGACCTTCAGG                         GACTTTTTGGCTGGAAGACTTCCTTGTATCCCTGGTGAATTACCAACTCTC
genomic: TTGTCTATCGGAAAAACAGATATATCGACTGCACTGGAAAGACCTTCAGGgttcccatct ... tttattgcagGACTTTTTGGCTGGAAGACTTCCTTGTATCCCTGGTGAATTACCAACTCTC
EST: gi|120493888|gb|EH222055.1|EH222055
EST:     TTGTCTATCGGAAAAACAGATATATCGACTGCACTGGAAAGACCTTCAGG                         GACTTTTTGGCTGGAAGACTTCCTTGTATCCCTGGTGAATTACCAACTCTC
genomic: TTGTCTATCGGAAAAACAGATATATCGACTGCACTGGAAAGACCTTCAGGgttcccatct ... tttattgcagGACTTTTTGGCTGGAAGACTTCCTTGTATCCCTGGTGAATTACCAACTCTC
EST: gi|207704837|gb|GD684644.1|GD684644
EST:     TTGTCTATCGGAAAAACAGATATATCGACTGCACTGGAAAGACCTTCAGG                         GACTTTTTGGCTGGAAGACTTCCTTGTATTCCTGGTGAATTACCAACTCTC
genomic: TTGTCTATCGGAAAAACAGATATATCGACTGCACTGGAAAGACCTTCAGGgttcccatct ... tttattgcagGACTTTTTGGCTGGAAGACTTCCTTGTATCCCTGGTGAATTACCAACTCTC
EST: gi|192303005|gb|FG997021.1|FG997021
EST:     TTGTCTATCGGAAAAACAGATATATCGACTGCACTGGAAAGACCTTCAGG                         GACTTTTTGGCTGGAAGACTTCCTTGTATCCCTGGTGAATTACCAACTCTC
genomic: TTGTCTATCGGAAAAACAGATATATCGACTGCACTGGAAAGACCTTCAGGgttcccatct ... tttattgcagGACTTTTTGGCTGGAAGACTTCCTTGTATCCCTGGTGAATTACCAACTCTC