Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTATATAGAAGAGATTATTGTGTCAGCAATTTCGTATCATTTGATGAAAAACAAAGACACTGAATACCGAAATGGGAAGCTTGTTATTTCTTCCAATAGgtgagacttaaaacattaattgcattaactagcaaaatttggtgaatgactttatcatttgtgaaacag

Basic information

species Glycine max
transcript GLYMA05G37290.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G37290.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G058491_T01 (Zea mays), 5'ss of exon 8
ACTATATAGAAGAGATTATTGTGTCAGCAATTTCGTATCATTTGATGAAAAACAAAGACACTGAATACCGAAATGGGAAGCTTGTTATTTCTTCCAATAGgtgag--acttaaaacattaattgcattaactagcaaaatttggtgaatgactttatcatttgtgaaacag
| |||||||| || ||| | ||||| ||| |||||||||| |||||||| ||||||||  | || || |||||||||||  | ||| | ||  | || |||| ||    |||||| | |  |||       |  ||    ||  |   |   |   || |   |  |||||
AGTATATAGAGGAAATTGTGGTGTCTGCAGTTTCGTATCACTTGATGAATAACAAAGATCCAGAGTATCGAAATGGGAAATTAGTTCTATCCACAAAGAGgttagcagattaaaatagtttttgtggatcttttcatttcttccttggtttatgactcttccattgaacag

upper sequence: GLYMA05G37290.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv02s0025g00650.t01 (Vitis vinifera), 5'ss of exon 9
ACTATATAGAAGAGATTATTGTGTCAGCAATTTCGTATCATTTGATGAAAAACAAAGACACTGAATACCGAAATGGGAAGCTTGTTATTTCTTCCAATAGgtgagacttaaaa---cattaattgcattaacta-gcaaaatttggtgaatgactttatcatttg----tgaaacag
|||| |||||||| ||| | ||||||||| |||| |||||||||||||| ||||||||   |||||||  ||||||||| ||||||||||| ||||| |||| ||| |  |     | ||||| |  ||  | |      | || ||   |     |    ||||    ||||||||
ACTACATAGAAGAAATTGTGGTGTCAGCAGTTTCTTATCATTTGATGAATAACAAAGATCATGAATACAAAAATGGGAAACTTGTTATTTCATCCAAGAGgttagattatagtgttctttaatggttttctcaatatgttaattagtaggtactcatcatgtttggctatgaaacag