Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGACCAGGTACAGCTGGATCGAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGAgtaagtaaatacatctcaaatgaaattttatatggaaattacaatggcaaaaatttatttttcaattttcattcagtttttcttattgtgctttttttttggtaactatctaatcactactgaactttatgtttttttcag

Basic information

species Glycine max
transcript GLYMA05G36040.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36040.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G005036_T02 (Zea mays), 5'ss of exon 11
TTGACCAGGTACAGCTGGATCGAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGAgta-agtaaatacatctcaaatgaaattttatatggaaattacaatggca-aaaatttatttttcaattttcattcagtttttcttattgtgctttttttttggtaactatctaatcactactgaactttatgtttttttcag
||   || | ||| || ||||| || ||| |||| |||||||||||| || ||||||| ||||||||||| ||| | |          |  || ||||  ||  || |     |  |  |  ||| | |  ||| || |   || |     | |  |   |                                                     
TTACACAAGAACAACTTGATCGTGCTAAAGAGGCAACCAAATCTGCAGTTCTGATGAACTTGGAATCAAGGgtacactgttcttgctcctgatcaaatcctaactgtatgacccgttttcctaaagtgttctttacagtacacacttttcctcttctgcag-----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213600182|gb|DB976057.1|DB976057
EST:     GAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGA                         ATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG
genomic: GAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGAgtaagtaaat ... tttttttcagATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG
EST: gi|58017252|gb|CX703994.1|CX703994
EST:     GAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGA                         ATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG
genomic: GAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGAgtaagtaaat ... tttttttcagATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG
EST: gi|58017426|gb|CX704168.1|CX704168
EST:     GAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGA                         ATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG
genomic: GAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGAgtaagtaaat ... tttttttcagATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG
EST: gi|58020763|gb|CX707505.1|CX707505
EST:     GAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGA                         ATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG
genomic: GAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGAgtaagtaaat ... tttttttcagATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG
EST: gi|10253962|gb|BE821672.1|BE821672
EST:     GAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGA                         ATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG
genomic: GAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGAgtaagtaaat ... tttttttcagATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG
EST: gi|5753594|gb|AI960881.1|AI960881
EST:     GAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGA                         ATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG
genomic: GAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGAgtaagtaaat ... tttttttcagATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG
EST: gi|213604268|gb|DB983440.1|DB983440
EST:     GAACCAAACAGGCTACCAAATTTGCAATTTTGATGAATTTGGAATCAAGA                         ATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG
genomic: GAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGAgtaagtaaat ... tttttttcagATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG