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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAACTTGGGAAAAAGGTTTGCTATGTGCAATTTCCTCAGAGATTTGATGGAATTGATAGACATGATAGATATTCAAACAGAAATGTGGTATTTTTCGATgtaagttttctcttccaattttctttgcttgtttgactgcttttcttttggttctttagtatggcagcttctaactccccaattgaaaacag

Basic information

species Glycine max
transcript GLYMA05G32100.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G32100.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM5G840940_T01 (Zea mays), 5'ss of exon 1
TCAACTTGGGAAAAAGGTTTGCTATGTGCAATTTCCTCAGAGATTTGATGGAATTGATAGACATGATAGATATTCAAACAGAAATGTGGTATTTTTCGATgtaagttttctcttccaattttctttgcttgtttgactg-cttttcttttggttctttagtatggcagcttctaactccccaattgaaaacag
     | ||  | ||| |||| ||||| |||||||| |||||||||||||| ||||||  ||| |||||||||||||||   ||||| || ||||| |||||| || |    |       ||||    || | |||  | | ||     | ||  | |      |   || |    ||  |   |     |||
AGTGTTGGGAGAGAAGATTTGTTATGTTCAATTTCCGCAGAGATTTGATGGCATTGATCAACACGATAGATATTCAAACCACAATGTTGTGTTTTTTGATgtatgtatggcatgaattcattctaactttatctgaaagacattgaagatagtattctgaacaagtttctgcattatctacttctctttgcag

upper sequence: GLYMA05G32100.1 (Glycine max), 5'ss of exon 10
lower sequence: AT4G39350.1 (Arabidopsis thaliana), 5'ss of exon 9
TCAACTTGGGAAAAAGGTTTGCTATGTGCAATTTCCTCAGAGATTTGATGGAATTGATAGACATGATAGATATTCAAACAGAAATGTGGTATTTTTCGATgtaagttttctcttccaattttctttgcttgtttgactgcttttcttttggttctttagtatggcagcttctaactccccaat-tgaaaacag
 |||   || || || ||||| ||||| || ||||| |||||||||||||| |||||||||||||||||||| |||||| | || || || || || |||||| || | ||  ||   ||| ||||| || | |   || |||  |  |  | || |  | |  ||  |  ||         | || ||||||
GCAATCGGGAAAGAAAGTTTGTTATGTTCAGTTTCCGCAGAGATTTGATGGGATTGATAGACATGATAGATACTCAAACCGTAACGTTGTGTTCTTTGATgtatgtgtccttatctcttttgctttgtttctgtttatgttttagtgcttttcctcttttct--catttgatattgttttggtgtggaaacag

upper sequence: GLYMA05G32100.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G21770.1 (Arabidopsis thaliana), 5'ss of exon 9
TCAACTTGGGAAAAAGGTTTGCTATGTGCAATTTCCTCAGAGATTTGATGGAATTGATAGACATGATAGATATTCAAACAGAAATGTGGTATTTTTCGATgtaagttttctcttccaattttctttgcttgtttgactgcttttcttttggttctttagtatggcagcttctaactccccaattgaaaacag
 ||    || || ||  | || ||||| || ||||||||||| |||||||| ||||||||||| ||| |||| |||||  | |||||||| || ||||||||| | ||||  |   | || |||||||  |||   ||  || | ||   | ||  |  |        |  |  |||    |||  ||||||
GCAGTCCGGAAAGAAAATATGTTATGTTCAGTTTCCTCAGAGGTTTGATGGGATTGATAGACACGATCGATACTCAAATCGCAATGTGGTTTTCTTCGATgtatgatttccatggaatttgtctttgc--gttgttctatttatgttacagctcccttctc-----attggtgtctctatgattataaacag

upper sequence: GLYMA05G32100.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv07s0031g02060.t01 (Vitis vinifera), 5'ss of exon 10
TCAACTTGGGAAAAAGGTTTGCTATGTGCAATTTCCTCAGAGATTTGATGGAATTGATAGACATGATAGATATTCAAACAGAAATGTGGTATTTTTCGATgtaagttttctcttccaattttctttgcttgtttgactgcttttcttttggttctttagtatggcagcttctaactccccaattgaaaacag
   | | || || |  ||||||||||| || ||||| || ||||||||||| || ||| | ||||||||||| |||||  ||||| | || || || |||||| || | |  ||      |||||| ||| |||  |   || |  |||  |   | | |  |  |||   | | |   ||||||||| |||
CTCATTGGGTAAGAGAGTTTGCTATGTCCAGTTTCCCCAAAGATTTGATGGGATCGATCGTCATGATAGATACTCAAATCGAAATATCGTCTTCTTTGATgtatgtataccttt------ttcttttcttttttttccctttattgtttcttatatcattgggaaagc---tgatttttcaattgaaa-cag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208233214|gb|GE034007.1|GE034007
EST:     GGTATTTTTCGAT                         ATTAACATGAAAGGATTGGATGGGATACAAGGTCCAATATATGTCGGAACT
genomic: GGTATTTTTCGATgtaagttttc ... ttgaaaacagATTAACATGAAAGGATTGGATGGGATACAAGGTCCAATATATGTCGGAACG