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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGTGCCCATGGAATCTCATCCATCTAAGCTTGTTGGAAGCAGAGGCTCAAAAAACCGATATTTTGACTTTGACAAACTGGGAGAGgtacaatttctagttattcttgaactaaacactatactggttgttctttatgtgtttcaatatgtattgacattatcattatatgactgataattatag

Basic information

species Glycine max
transcript GLYMA05G32070.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G32070.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os02g56100.1 (Oryza sativa), 5'ss of exon 10
GGTGTGCCCATGGAATCTCATCCATCTAAGCTTGTTGGAAGCAGAGGCTCAAAAAACCGATATTTTGACTTTGACAAACTGGGAGAGgtacaatttctagttattcttgaactaaacactatactggttgttctttatgtgtttcaatatgtattgacattatcattatatgactgataattatag
||||| || ||||| ||||||||  ||||||||||||| || |  || || ||||||||||||||||||||||| ||| | |  |||||     ||  |  | | |||    ||  |    | |    |   ||  |||  |   ||||| | |||   ||||                       
GGTGTTCCTATGGAGTCTCATCCGGCTAAGCTTGTTGGTAGTAATGGATCCAAAAACCGATATTTTGACTTTGATAAATTAGCTGAGgtttgtgtttaatatttacttactttatgcctcttccccactagcctgaatgc-tactaatatttgttgg--ttattgcag------------------

upper sequence: GLYMA05G32070.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os06g07210.1 (Oryza sativa), 5'ss of exon 10
GGTGTGCCCATGGAATCTCATCCATCTAAGCTTGTTGGAAGCAGAGGCTCAAAAAACCGATATTTTGACTTTGACAAACTGGGAGAGgtacaatttctagttattcttgaactaaacactatactggttgttctt-tatgtgtttcaatatgtattgacattatcattatatgactgataattatag
||||| ||||| || || ||||||||||| ||||| || ||||| |  || |||||  ||||||||||||||||||| || |  |||||    | |||  |      ||   | |     | | | | |  ||||   | |||      ||||  |||||   |  | || | ||            
GGTGTCCCCATAGAGTCCCATCCATCTAAACTTGTCGGGAGCAGTGATTCTAAAAATAGATATTTTGACTTTGACAAGCTTGCTGAGgtctgctgtctgatcgaatctg--tttattctaaaaatagatactcttgcctatgtcagtgaatgttctgacacgctgttgattttaccag---------

upper sequence: GLYMA05G32070.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 10
GGTGTGCCCATGGAATCTCATCCATCTAAGCTTGTTGGAAGCAGAGGCTCAAAAAACCGATATTTTGACTTTGACAAACTGGGAGAGgtacaatttctagttattcttgaactaaacactatactggttgttctttatgtgtttcaatatgtattgacattatcattatatgactgataattatag--------------
|| || || ||||||||  |||| || ||||||||||| |||||||| || || || |||| |||||| ||||||||||| | ||||||   || | |  |||   | | ||  |    | | ||  |  || || || ||| | | ||     | | |  ||||  || | |||  |  || |                
GGGGTTCCAATGGAATCAAATCCTTCAAAGCTTGTTGGGAGCAGAGGTTCTAAGAATCGATTTTTTGATTTTGACAAACTAGCAGAGgtctgatatttt-ttaccttagcacatatgtttctgcttttgtttgttcatttgtgttattagcatataaaaaaatcagcatgtaactcttttttttttttcttttgttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296534|gb|FG991640.1|FG991640
EST:     GAAGCAGAGGCTCAAAAAACCGATATTTTGACTTTGACAAACTGGGAGAG                         GTTACTGCAATAGTGGCAACAAACCTCAATAAAATAATTGATGTTAATTAC
genomic: GAAGCAGAGGCTCAAAAAACCGATATTTTGACTTTGACAAACTGGGAGAGgtacaatttc ... ataattatagGTTACTGCAATAGTGGCAACAAACCTCAATAAAATAATTGATGTTAATTAC
EST: gi|19345937|gb|BM890817.1|BM890817
EST:     GAAGCAGAGGCTCAAAAAACCGATATTTTGACTTTGACAAACTGGGAGAG                         GTTACTGCAATAGTGGCAACAAACCTCAATAAAATAATTGATGTTAATTAC
genomic: GAAGCAGAGGCTCAAAAAACCGATATTTTGACTTTGACAAACTGGGAGAGgtacaatttc ... ataattatagGTTACTGCAATAGTGGCAACAAACCTCAATAAAATAATTGATGTTAATTAC