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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTACACCCTCTGTGGTTTCTCTGATGGGAGGACTGCTACCCTTTGGCAGCATATTCATTGAAATGTATTTTGTATTCACTTCCTTCTGGAATTACAAGgtgaatcacagcactactatgacttgtttctgtgataaagtttctttttcacttattggtttggttataaaagttattcgcatgtcataagagcagagca...

Basic information

species Glycine max
transcript GLYMA05G30210.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30210.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os12g07670.1 (Oryza sativa), 5'ss of exon 10
CCTTACACCCTCTGTGGTTTCTCTGATGGGAGGACTGCTACCCTTTGGCAGCATATTCATTGAAATGTATTTTGTATTCACTTCCTTCTGGAATTACAAGgtgaa-----tcacagcactactatgacttgtttctgtgataaagtt--tctttttcacttattggtttggttataaaagttattcgcatgtcataagagcagagca
||||||||| |||||  | ||  ||||||| || ||||| ||||||||||| || |||||||| ||||| ||||| ||||| || |||||||| |||||||| ||     | ||   | ||       ||||||  |  | | |  |  |   | |    || ||||   |||  |    ||||  |  ||    |  |        
CCTTACACCTTCTGTTATCTCATTGATGGGTGGGCTGCTTCCCTTTGGCAGTATCTTCATTGAGATGTACTTTGTGTTCACGTCATTCTGGAACTACAAGgtaaacagtttaacttaagtatccaagtttgttttggaaacagaagtagtgcctatggtgtactggt---gttcaacctcttatatggctgcttcataaatta----

upper sequence: GLYMA05G30210.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os02g34690.1 (Oryza sativa), 5'ss of exon 10
CCTTACACCCTCTGTGGTTTCTCTGATGGGAGGACTGCTACCCTTTGGCAGCATATTCATTGAAATGTATTTTGTATTCACTTCCTTCTGGAATTACAAGgtgaatcacagcactactatgacttgtttctgtgataaagtttctttttcacttattggtttggttataaaagttattcgcatgtcataagagcagagca----
||| || || |||||  || | || |||||||||||||| || ||||| ||||| |||||||| ||||| ||||| ||||| || || ||||| |||||||| || ||  |||  ||||       |||        | | ||| ||   |   |    |  |  | | | | |||| |     || | |      |       
CCTCACGCCTTCTGTCATTGCCCTCATGGGAGGACTGCTTCCTTTTGGTAGCATCTTCATTGAGATGTACTTTGTCTTCACATCATTTTGGAACTACAAGgtaaaaca-ggcaacacta------attttcccatacaggcttcattactaaggagccctgagagt-tgagacttatgcatccttcctgatcatctattgacag

upper sequence: GLYMA05G30210.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os11g07910.1 (Oryza sativa), 5'ss of exon 10
CCTTACACCCTCTGTGGTTTCTCTGATGGGAGGACTGCTACCCTTTGGCAGCATATTCATTGAAATGTATTTTGTATTCACTTCCTTCTGGAATTACAAGgtgaat----cacagcact--actatgacttgtttctgtgataaagtttctttttcacttattggtttggttataaaagttattcgcatgtcataagagcagagca---------------------------------------------------------
 ||||||||||||||  | ||  ||||||| ||||| || ||||| |||||||| ||||| || ||||| ||||| || ||||| |||||||| |||||||| ||     || | || |  ||  | |  || ||||  | |     ||||     | |||||    | |  | | | |  |||  ||    ||  |  |  | |                                                          
TCTTACACCCTCTGTTATCTCATTGATGGGTGGACTACTCCCCTTCGGCAGCATCTTCATCGAGATGTACTTTGTGTTTACTTCATTCTGGAACTACAAGgtaaagaaaacatatcagtgaacactaatgtgcttctcagttctcacttctcaacaaattattttgctaga-acagatggcatttacagtagatgtgtaccaacctaaaactctttttaatttgatggatagatagtaaccctatttctttggtatttggcag

upper sequence: GLYMA05G30210.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G087212_T01 (Zea mays), 5'ss of exon 10
CCTTACACCCTCTGTGGTTTCTCTGATGGGAGGACTGCTACCCTTTGGCAGCATATTCATTGAAATGTATTTTGTATTCACTTCCTTCTGGAATTACAAGgtgaatcacagcactactatgacttgtttctgtgataaagtttc--tttttcacttattggtttggttataaaagttattcgcatgtcataagagcagagca-------------------------------------------------
||||||||| |||||  |||| |||||||| ||||| || ||||| |||||||| |||||||| ||||| || |||||||||||||||||||| |||||||| ||  | |  |  |   ||  |  ||   ||  ||||| | |  |      | ||| |  |    |  |  | ||  | |   |||| |  |||| ||                                                   
CCTTACACCTTCTGTTATTTCACTGATGGGTGGACTTCTCCCCTTCGGCAGCATCTTCATTGAGATGTACTTCGTATTCACTTCCTTCTGGAACTACAAGgtaaa--aaaaaaacatagtgg-tgattgaagtactaaagatccaatcaccagcatatagaatgatctgcactactttcttg---gtcacagtagcaaagtttctttcttttagtttcaaggaatattgactccacttggtgccttggcag

upper sequence: GLYMA05G30210.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G026231_T01 (Zea mays), 5'ss of exon 10
CCTTACACCCTCTGTGGTTTCTCTGATGGGAGGACTGCTACCCTTTGGCAGCATATTCATTGAAATGTATTTTGTATTCACTTCCTTCTGGAATTACAAGgtgaatca-cagcactactatgacttgttt-----ctgtgataaagtttctttttcacttattggtttggttataaaagttattcgcatgtcataagagcagagca
||||||||| |||||  | ||  ||||||| || ||||| ||||||||||| || |||||||| ||||| || || ||||| || |||||||| || ||||| ||  | ||       | | || | |||     | |||| |  | |||| || |   | |    ||| |  |  ||| | | |     |  | |          
CCTTACACCTTCTGTCATCTCATTGATGGGTGGCCTGCTTCCCTTTGGCAGTATCTTCATTGAGATGTACTTCGTGTTCACATCATTCTGGAACTATAAGgtaaacgagcaaatgctttttaacatttttgtaccccgtgacatcgcttctcttaccactgtcatcttg-tactgtaaggtgtgcatggttggttactttt-----

upper sequence: GLYMA05G30210.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G10950.1 (Arabidopsis thaliana), 5'ss of exon 10
CCTTACACCCTCTGTGGTTTCTCTGATGGGAGGACTGCTACCCTTTGGCAGCATATTCATTGAAATGTATTTTGTATTCACTTCCTTCTGGAATTACAAGgtgaatcacagcactactatgacttgtttctgtgataaagtttc----tttttcacttattggtttggttataaaagttattcgcatgtcataagagcagagca
| | || || || || || || |||||||| ||  ||||||||||||| ||||| |||||||| ||||| ||||| ||||| |||||||||||||||||||| ||| | ||     ||             || ||  | || |    | ||   |  |||||         | |  ||  |     || | |    |  | | 
CTTGACTCCATCAGTCGTCTCCCTGATGGGGGGTTTGCTACCCTTTGGAAGCATCTTCATTGAGATGTACTTTGTCTTCACATCCTTCTGGAATTACAAGgtaaat-atagtttctcttaataagaacaaagttatggaattgcaaattcttattccaattggccaaaccggagagatt--tgattagtgagagactctcaac-

upper sequence: GLYMA05G30210.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv18s0041g00680.t01 (Vitis vinifera), 5'ss of exon 10
CCTTACACCCTCTGTGGTTTCTCTGATGGGAGGACTGCTACCCTTTGGCAGCATATTCATTGAAATGTATTTTGTATTCACTTCCTTCTGGAATTACAAGgtgaatcacagcactactatgacttgtttctgtgataaagtttctttttcacttattggtttggttataaaagttattcgcatgtcataagagcagagca-
 || ||||| ||||| || ||||| |||||||||||||| || ||||| || || |||||||| ||||||||||| ||||| |||||||||||||| ||||| |||   | || | || | | |  |||   ||  |  | |     ||   ||  | |  |  |   || | ||   |   ||       | |       
TCTCACACCATCTGTAGTCTCTCTCATGGGAGGACTGCTTCCTTTTGGGAGTATTTTCATTGAGATGTATTTTGTCTTCACATCCTTCTGGAATTATAAGgtaaatatgaccatttct-tcaataatttaaatgcaagtgatgagaattgttttccttgagtattgtcaagattttccccagtgctgctgcacctttattt

upper sequence: GLYMA05G30210.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv12s0035g00280.t01 (Vitis vinifera), 5'ss of exon 10
CCTTACACCCTCTGTGGTTTCTCTGATGGGAGGACTGCTACCCTTTGGCAGCATATTCATTGAAATGTATTTTGTATTCACTTCCTTCTGGAATTACAAGgtgaatcacagcactactatgacttgtttctgtgataaagtttctttttcacttattggtttggttataaa-agttattcgcatgtca-taagagcagagca--------
 || ||||| ||||| || ||  |||||||||| ||||||||||||||||||||||| ||||| ||||| ||||| ||||| |||||||||||||||||||| |||         |  ||||||  ||  | |||    | ||  |    |  || |||| ||   |     | || ||    ||| | | | | ||  |||        
TCTCACACCATCTGTTGTCTCAATGATGGGAGGTCTGCTACCCTTTGGCAGCATATTTATTGAGATGTACTTTGTCTTCACATCCTTCTGGAATTACAAGgtaaat---------ataatgactctttggtttga-gtggcttgctaaaaagatactggtgtgagcaaggccatttttttatttgtaaatgaaaacattgcagtgtcttg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193403010|gb|FK367276.1|FK367276
EST:     GCATATTCATTGAAATGTATTTTGTATTCACTTCCTTCTGGAATTACAAG                         GTGTACTATGTGTATGGCTTTATGCTGCTAGTCTTTCTGATTCTTATCATC
genomic: GCATATTCATTGAAATGTATTTTGTATTCACTTCCTTCTGGAATTACAAGgtgaatcaca ... tggcatacagGTGTACTATGTGTATGGCTTTATGCTGCTAGTCTTTCTGATTCTTATCATC
EST: gi|208294361|gb|GE092178.1|GE092178
EST:     GCATATTCATTGAAATGTATTTTGTATTCACTTCCTTCTGGAATTACAAG                         GTGTACTATGTGTATGGCTTTATGCTGCTAGTCTTTCTGATTCTTATCATC
genomic: GCATATTCATTGAAATGTATTTTGTATTCACTTCCTTCTGGAATTACAAGgtgaatcaca ... tggcatacagGTGTACTATGTGTATGGCTTTATGCTGCTAGTCTTTCTGATTCTTATCATC