Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGCAGGAAGTCCCTTGCAGCCTCAAGCTTTTGGAGCATTTAGCACAGCATCAATGACAACTGGTTTTGTCATTTTAGACGAAAATGGAGTTCCTTATgtaagaaaattttctggatagtttgagttctttggtcataatttttatttacttatgctgccacttgtgacaacattacatcatacccagatctgggtgc...

Basic information

species Glycine max
transcript GLYMA05G29030.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G29030.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv06s0004g00750.t01 (Vitis vinifera), 5'ss of exon 11
CATTGCAGGAAGTCCCTTGCAGCCTCAAGCTTTTGGAGCATTTAGCACAGCATCAATGACAACTGGTTTTGTCATTTTAGACGAAAATGGAGTTCCTTATgtaagaaaattttctggatagtttgagttctttggtcataatttttatttacttatgctgccacttgtgacaacattacatcatacccagatctgggtgc-------
|||   ||||||    ||||| ||||||||||||||| | |||||||| ||  |||||||||| || ||||||||| | || |||||||| ||||| |||||||||  |||  || |  ||||    ||  |||||  ||  |  |    | || | |  |      ||      | | | | ||    ||   ||||||       
CATCCAAGGAAGCGTGTTGCAACCTCAAGCTTTTGGAACTTTTAGCACTGCTGCAATGACAACAGGCTTTGTCATTCTTGATGAAAATGGTGTTCCCTATgtaagaccattaactag-cagtt--gtttaattggttcta-ctcctccaaaattgttccactttccatgctggtttgataac-tatatgga--agggtgctgcactt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23733147|gb|BU764759.1|BU764759
EST:     CATCAATGACAACTGGTTTTGTCATTTTAGACGAAAATGGAGTTCCTTAT                         CCAGATGATGTTGCTTGTGTTGGGGAAGTGGGCTTATTTCCTCTCTCTCTG
genomic: CATCAATGACAACTGGTTTTGTCATTTTAGACGAAAATGGAGTTCCTTATgtaagaaaat ... aatatgacagCCAGATGATGTTGCTTGTGTTGGGGAAGTGGGCTTATTTCCTCTCTCTCTG
EST: gi|308098274|gb|HO760015.1|HO760015
EST:     CATCAATGACAACTGGTTTTGTCATTTTAGACGAAAATGGAGTTCCTTAT                         CCAGATGATGTTGCTTGTGTTGGGGAAGTGGGCTTATTTCCTCTCTCTCTG
genomic: CATCAATGACAACTGGTTTTGTCATTTTAGACGAAAATGGAGTTCCTTATgtaagaaaat ... aatatgacagCCAGATGATGTTGCTTGTGTTGGGGAAGTGGGCTTATTTCCTCTCTCTCTG