1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AAGCACTCTATCGGAGGGCACAGGCATATCTTCATCTTGTGGACTTAGATCTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgcttttgttctcaagtgtgatcaacttgaatatatatactttatttccaaagagacaacactgatatatggaatttctttgtttgtattaaccactgttggatggatattaccag
species | Glycine max |
transcript | GLYMA05G28260.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAG GGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAAEST: gi|57574566|gb|CX547541.1|CX547541
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgctttt ... atattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
EST: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAG GGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAAEST: gi|7234543|gb|AW569879.1|AW569879
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgctttt ... atattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
EST: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAG GGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAAEST: gi|10846141|gb|BF069114.1|BF069114
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgctttt ... atattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
EST: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAG GGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAAEST: gi|7233418|gb|AW568764.1|AW568764
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgctttt ... atattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
EST: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAG GGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAAEST: gi|58023136|gb|CX709877.1|CX709877
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgctttt ... atattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
EST: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAG GGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAAEST: gi|10254106|gb|BE821872.1|BE821872
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgctttt ... atattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
EST: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAG GGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAAEST: gi|11412722|gb|BF424733.1|BF424733
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgctttt ... atattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
EST: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAG GGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAAEST: gi|209699581|gb|BW678084.1|BW678084
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgctttt ... atattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
EST: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAG GGATGTCAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAAEST: gi|58022830|gb|CX709571.1|CX709571
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgctttt ... atattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
EST: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAG GGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAAEST: gi|58019828|gb|CX706570.1|CX706570
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgctttt ... atattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
EST: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAG GGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAAEST: gi|6455054|gb|AW185737.1|AW185737
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgctttt ... atattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
EST: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAG GGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAAEST: gi|51334753|gb|CO978619.1|CO978619
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgctttt ... atattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
EST: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAG GGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAAEST: gi|7234663|gb|AW569998.1|AW569998
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgctttt ... atattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
EST: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAG GGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAAEST: gi|19346686|gb|BM891566.1|BM891566
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgctttt ... atattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
EST: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAG GGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgctttt ... atattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCACTCTATCGGAGGGCACAGGCATATCTTCATCTTGTGGACTTAGATCTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgcttttgttctcaagtgtgatcaacttgaatatatatactttatttccaaagagacaacactgatatatggaatttctttgtttgtattaaccactgttggatggatattaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA