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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGCTAGTTGTATGTTGGCCTCTGGGAGTGATGATGGGACTATTTCTATTCGTGATCTCAGACTGCTCAAGgtacaagttgacttcgtaaagaataaaacgatagtaaacatgcttcatttataacaggaaggttactgtgtgcatgtgatgttctctcatgtcaatggtg...

Basic information

species Glycine max
transcript GLYMA05G28040.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G28040.2 (Glycine max), 5'ss of exon 10
lower sequence: AT2G19540.1 (Arabidopsis thaliana), 5'ss of exon 9
GTTGGCTAGTTGTATGTTGGCCTCTGGGAGTGATGATGGGACTATTTCTATTCGTGATCTCAGACTGCTCAAGgtacaagttgacttcgtaaagaataaaacgatagtaaacatgcttcatttataacaggaaggttactgtgtg-catgtgatgttctctcatgtcaatggtg
| |||||||||| ||||||||||| || |||||||| |||||  | || || |||||||| |||||| |||| |||  |||| |      |||   ||     ||| |   | |       |  ||||| ||   | |    ||| ||| | |     |||      |      
GCTGGCTAGTTGCATGTTGGCCTCAGGAAGTGATGACGGGACATTCTCCATCCGTGATCTTAGACTGATCAAAgta--agttaa------aaaccgtagctatatattttccttagcaatctcttaacaagattctgatatggtggcatataa----atcttgaactag-----

upper sequence: GLYMA05G28040.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv11s0016g02270.t01 (Vitis vinifera), 5'ss of exon 9
GTTGGCTAGTTGTATGTTGGCCTCTGGGAGTGATGATGGGACTATTTCTATTCGTGATCTCAGACTGCTCAAGgtacaagttgacttcgtaaagaataaaacgatagtaaacatgcttcatttataacaggaaggttactgtgtgcatgtgatgttctctcatgtcaatggtg-----
| ||||||| |||||| |||||||||| ||||||||||||||  |||||||||||||||| ||  |||||||||||    ||  ||  | | |   ||||  ||   | || || || | |||  ||  |     ||    | | |  || |   |     | |  |||||       
GCTGGCTAGCTGTATGCTGGCCTCTGGAAGTGATGATGGGACATTTTCTATTCGTGATCTTAGGTTGCTCAAGgtatgcattttctgagaatattttaaagtgaatattaatattctgcttttgcaatgga---tttgacctatcccggtaaatctaagcaaag--aatggccttttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17023928|gb|BM094962.1|BM094962
EST:     CTGGGAGTGATGATGGGACTATTTCTATTCGTGATCTCAGACTGCTCAAG                         GAAGGAGATTCTGTGGTAGCACATTTCGAATATCACAAGCACCCAATCACA
genomic: CTGGGAGTGATGATGGGACTATTTCTATTCGTGATCTCAGACTGCTCAAGgtacaagttg ... ttgtgggcagGAAGGAGATTCTGTGGTAGCACATTTCGAATATCACAAGCACCCAATCACA