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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTATCAAAAGAAATAAATGATTCATTCAAACAGTCATCACAGGCGAGGTCAAAACTTGCATCAGGGATTGAAATGAGTGTTCATGTTTTAACTACAGGgtaagctttgtgtcttctcatcatatatatatatgtgtgtgtgtgtgtgtgtgttgatagaaagataggtttgtgtcttctcatcatatatatgtatatgtgtgtgtggatagaaagatagatttttggagaatctaactggagttggatgagtgcag

Basic information

species Glycine max
transcript GLYMA05G27240.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G27240.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os03g57290.1 (Oryza sativa), 5'ss of exon 10
AATTATCAAAAGAAATAAATGATTCATTCAAACAGTCATCACAGGCGAGGTCAAAACTTGCATCAGGGATTGAAATGAGTGTTCATGTTTTAACTACAGGgtaagctttgtgtcttctcatcatatatatatatgtgtgtgtgtgtgtgtgtgttgatagaaagataggtttgtgtcttctcatcatatatatgtatatgtgtgtgtggatagaaagatagatttttggagaatctaactggagttggatgagtgcag
||||||| |||||||||||||| || ||||| || ||||| || || ||| |||| ||| |||| || ||||||||||||||||| ||  | || |||||||| |     |||   ||   ||| | || ||            |||||   ||| |  ||     | |||  ||| | | || ||  | | |  |  |     |   |||||| ||                                         
AATTATCCAAAGAAATAAATGAGTCTTTCAAGCAATCATCTCAAGCAAGGACAAAGCTTCCATCTGGCATTGAAATGAGTGTTCACGTGCTTACAACAGGgtaggtaacatgtgc-cttgccatttttacat------------gtgtgctggtttactgagtagcatgttc-tgtttacacaacacttgtctaaaccta---atactgatagatag-----------------------------------------

upper sequence: GLYMA05G27240.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G704093_T01 (Zea mays), 5'ss of exon 9
AATTATCAAAAGAAATAAATGATTCATTCAAACAGTCATCACAGGCGAGGTCAAAACTTGCATCAGGGATTGAAATGAGTGTTCATGTTTTAACTACAGGgtaagctttgtgtcttctcatcatatatatatatgtgtgtgtgtgtgtgtgtgttgatagaaagataggtttgt-gtcttctcatcatatatatgtatatgtgtgtgtggatagaaagatagatttttggagaatctaactggagttggatgagtgcag--------------------
||||||| ||||||||||| ||||||||||  || ||||| || || ||| |||| ||| | ||||| ||||||||||||||||||||  | || |||||||||   || |  | ||    | |  ||| |||  | | ||   |    |||   | |    |||||| ||||| | | |    ||||  || ||       ||    | || | | | | |  |||||  |    |      | ||   |   |                        
AATTATCCAAAGAAATAAACGATTCATTCAGGCAATCATCTCAAGCTAGGACAAAGCTTCCCTCAGGCATTGAAATGAGTGTTCATGTGCTTACAACAGGgtaaatatttttgcctcattgctttgatacatac-tctctgca-gaacttgttccggtt---agatagctttgtagacctgatctcatgcatgtgctccgtagtcctagcatggcaggctggccttttgatgttgttggtcatatttatgtagttatgataaaatatgttgatttacag

upper sequence: GLYMA05G27240.1 (Glycine max), 5'ss of exon 10
lower sequence: AC155496.2_FGT009 (Zea mays), 5'ss of exon 10
AATTATCAAAAGAAATAAATGATTCATTCAAACAGTCATCACAGGCGAGGTCAAAACTTGCATCAGGGATTGAAATGAGTGTTCATGTTTTAACTACAGGgtaagc--tttgtgtcttctcatcatata-tatatatgt-gtgtgtgtgtgtgtgtgttga---tagaaagataggtttgtgtcttctcatcatatatatgtatatgtgtgtgtggatagaaagatagatttttggagaatctaactggagttggatgagt-gcag
||||||| |||||||||||||||||||||| ||| ||||| || || ||| |||| ||| | || || |||||||||||||| |||||  | || |||||||||    ||| || |   |  |   ||| | | | ||| |    |||   | |  | |     | ||||  |    |  ||  | |  |        |||       |  | | |||           | |||    | |     |  | |  | ||| |  |||
AATTATCCAAAGAAATAAATGATTCATTCAGACAATCATCTCAAGCTAGGACAAAGCTTCCCTCTGGCATTGAAATGAGTGTCCATGTGCTTACAACAGGgtaaataatttttgcccattgctttgatactctctctgtagaacatgttccttttagatagctttggaaacctgacctcatgcatccatagtcctagcatgcgagctggacttttgatgttgttggttgtgtttatgtagttctgataaaatatgttgatttacag

upper sequence: GLYMA05G27240.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G46210.1 (Arabidopsis thaliana), 5'ss of exon 10
AATTATCAAAAGAAATAAATGATTCATTCAAACAGTCATCACAGGCGAGGTCAAAACTTGCATCAGGGATTGAAATGAGTGTTCATGTTTTAACTACAGGgtaagctttgtgtcttctcatcatatat-atatatgtgtgtgtgtgtgtgtgtgttgatagaaagataggtttgtgtcttctcatcatatatatgtatatgtgtgtgtggatagaaagatagatttttggagaatctaactggagttggatgagtgcag
|||| ||||| ||||| || || ||||||||||| || || ||||| ||  |||||||  |||| || ||||| |||||||| || |||||||| |||||||| |     ||| |     | ||  |  |||||  ||   |  || |  | |  ||| | | | | || ||  |  |||| | || |||| ||  |                                                              
AATTGTCAAAGGAAATCAACGAGTCATTCAAACAATCTTCCCAGGCCAGAACAAAACTGCCATCGGGAATTGAGATGAGTGTCCACGTTTTAACAACAGGgtatgtacaatgtatcaattttatccaggatataactgctggaatgcggatatcatgacatatataaagcttgttaacttcccgtc-tata-atacag-------------------------------------------------------------

upper sequence: GLYMA05G27240.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv10s0003g03710.t01 (Vitis vinifera), 5'ss of exon 10
AATTATCAAAAGAAATAAATGATTCATTCAAACAGTCATCACAGGCGAGGTCAAAACTTGCATCAGGGATTGAAATGAGTGTTCATGTTTTAACTACAGGgtaagctttgtgtcttctcatcatatatatatatgtgtgtgtgtgtgtgtgtgttgatagaaagataggtttgtgtcttctcatcatatatatgtatatgtgtgtgtggatagaaagatagatttttggagaatctaactggagttggatgagtgcag
||||||| ||||| |||||||| || |||||||| ||||| || || ||| |||||||| || |||| ||||| |||||||||||||| ||||| || ||||||  | | | |  | |  |  | ||| || |  |    |         ||  | |||   |   |   || | |||||  |  |  |  |  ||| | | || |||| | |    | ||                                     
AATTATCTAAAGAGATAAATGAGTCCTTCAAACAATCATCGCAAGCCAGGACAAAACTTCCAACAGGAATTGAGATGAGTGTTCATGTCTTAACAACTGGgtaa-ttctatcttattttgttttctat-tacac-ttcaagaaaacaca-gtcctaatatttaatca--cttatttcttccaaggaatttaacttat-tatttgagtggctgggct-acag-------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19346215|gb|BM891095.1|BM891095
EST:     TCAAAACTTGCATCAGGGATTGAAATGAGTGTTCATGTTTTAACTACAGG                         GCACTGGCCAACATATCCGCCCATGGATGTTAGACTTCCTCATGAATTGAA
genomic: TCAAAACTTGCATCAGGGATTGAAATGAGTGTTCATGTTTTAACTACAGGgtaagctttg ... atgagtgcagGCACTGGCCAACATATCCGCCCATGGATGTTAGACTTCCTCATGAATTGAA
EST: gi|31561323|gb|CD487161.1|CD487161
EST:     TCAAAACTTGCATCAGGGATTGAAATGAGTGTTCATGTTTTAACTACAGG                         GCACTGGCCAACATATCCGCCCATGGATGTTAGACTTCCTCATGAATTGAA
genomic: TCAAAACTTGCATCAGGGATTGAAATGAGTGTTCATGTTTTAACTACAGGgtaagctttg ... atgagtgcagGCACTGGCCAACATATCCGCCCATGGATGTTAGACTTCCTCATGAATTGAA