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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTATTTTCATCCAAATgtaatctcgaatactagcttttgtagtggtcattgggtaattttttttatataatagttggtccagctattttaaatttgaaatatttcaccatctcag

Basic information

species Glycine max
transcript GLYMA05G25780.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os01g44040.1 (Oryza sativa), 5'ss of exon 9
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTATTTTCATCCAAATgtaa-----------tctcgaat-actagcttttgta-gtggtcattgggtaattttttttatataatagttggtccagctattttaaatttgaaatatttcaccatctcag-------------------------------------------------------------
|||  |  |  | || |   ||||||||||||||||| ||||||| |||||||| || || ||||| ||||||||||| |||||||| || |||||||||||||           || |  || |||   |||| |  |   ||| ||   | | ||| |  |       ||   |    |  ||||  |  ||   | ||||  ||   |                                                              
AAAAGCAAACTTACCACTGTTGCATGAGTGGCATTTCCGATCTGGCCTTGATCGTTATATATGGATTATTGGAATGATCTATGCCTACTTCCATCCAAATgtaagttttcaaggatcacagatgactgttttttatttgatatcactgtagagtctttgtccttctgcccttctccatcattgtttatgtaggatgcaattcattatgctatggtttcaggtatttttcttctatcagtagtagtgcttgaaatgtagatctctgtcatacag

upper sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os05g50510.1 (Oryza sativa), 5'ss of exon 9
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTATTTTCATCCAAATgta----------------atctcgaatactagcttttgtagtggtcattgggtaattttttttatataatagttggtccagctattttaaatttgaaatatttcacc-atctcag------------------------------------------------------------
 ||| |  |  | || |   | ||||||||||||||| ||||||| |||||||| ||||| ||||| ||||||||||| ||||| || || || || ||||||                |||   | | |   | |||| |   | |||  |  |    |   ||||   |  |   | ||   ||||     | |  |  | || |  || | |                                                             
CAAGGCAAACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTTGATCGATACATATGGATTATTGGAATGATCTATGCTTACTTCCACCCTAATgtaagtaattcggttatggatccacatttcctccctttggaactg-catgagtgagcagtacatataccgtgttcctttcatacatttcttcctagggagttctctcttattttaagaatatgttccttgtttatactatatattaatgtagcatggaatccgctatctgaaatag

upper sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G458538_T01 (Zea mays), 5'ss of exon 4
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTATTTTCATCCAAATgta---atctcgaatactagctt---ttgtagtggtcattgggtaattttttttatataatagttggtccagctattttaaatttgaaatatttcaccatctcag----------------------------------------------------------------------
 ||| |  |  | || |   | ||||||||||||||| ||||||| || ||||| ||||| ||||| ||||||||||||||||| || || ||||| ||||||   || ||   ||    | |   ||    || |||     | |   | | | ||  | |  |  |        | |  || |   || || |   |||||                                                                        
CAAGGCACACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTCGATCGATACATATGGATTATTGGAATGATTTATGCTTACTTCCATCCTAATgtaagtatttcagttatggacctatattaccctgatcaccctctgagactgtatctacgagatgttattggatacgtctcgatat---attttccctaatctctatatatattaagcatcgtttcttttgttcagatcatgttaaccttaacatggagccttttgacgtaaacag

upper sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G370741_T01 (Zea mays), 5'ss of exon 4
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTATTTTCATCCAAATgta---atctcgaatactagcttttgtag---tggtcattgggtaattttttttatataatagttggtccagctattttaaatttgaaatatttcaccatctcag
 ||| |  |  | || |   | ||||||||||||||| ||||||| || ||||| ||||| || || ||||||||||||||||| || || ||||| ||||||   || ||  |||    | | | |     || |||     | |  || | | |   | |  |  |        | |  || |   || || |   |||||  
CAAGGCACACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTCGATCGATACATATGTATTATTGGAATGATTTATGCTTACTTCCATCCTAATgtaagtatttcagatatggacctatattaccctgatcaccctctgagattgtatctgcgagatgttattggatacgtctcgatat---attttccctaatctc--

upper sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G463445_T01 (Zea mays), 5'ss of exon 4
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTATTTTCATCCAAATgta---atctcgaatactagcttttgtag---tggtcattgggtaattttttttatataatagttggtccagctattttaaatttgaaatatttcaccatctcag
 ||| |  |  | || |   | ||||||||||||||| ||||||| ||  |||| ||||| ||||| ||||||||||||||||| || || ||||| ||||||   || || ||||    | | | |     || |||     | |  || | | |   | | ||   |  | ||  |     | || ||||||  ||   ||  
CAAGGCACACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTCAATCGATACATATGGATTATTGGAATGATTTATGCTTACTTCCATCCTAATgtaagtatttcaaatatggacctatattaccctgatcaccctctgagattgtatctgcgagatttta-ctggatacgtc----tcgatatattttccctaatcta

upper sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G076394_T01 (Zea mays), 5'ss of exon 9
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTATTTTCATCCAAATgtaa----tct--cgaatactagcttttgtagtggtcattgggtaattttttttatataatagttggtccagctattttaaatttgaaatatttcaccatctcag
 |||    |  | || |   | || || ||||  ||| | ||||| |||||||| ||||| ||||| ||||||||||||||||| || ||||| || || ||||    |||   ||  |||  | ||  | | |    ||  ||  ||  |  | |||    |||| || |   ||       ||  |   |  || ||      
TAAGATGAACTTACCCCTGTTACACGAATGGCGCTTCCGCTCTGGCCTTGATCGTTACATATGGATCATTGGAATGATTTATGCTTACTTTCACCCCAACgtaagtgttctaaagagaactgacattcatggagtgtgttaagtgtttcctcct-tat----gttgatctaaacatgcatgccttctatcctgacaacaag----

upper sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G29890.2 (Arabidopsis thaliana), 5'ss of exon 8
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTATTTTCATCCAAATgtaatctcgaatactagcttttgtagtggtcattgggtaattttttttatataatagttggtccagctattttaaatttgaaatatttcaccatctcag
 || || || || || ||  | || || ||||||||||||||||| |||||||||||||| ||||| || || ||||| ||||| ||||||||||| | ||||||  |  |  |  | |  | |  |  |  ||   ||  |  | |   |  |  |    |  |  ||||    |||| |                  
TAAACCAGACCTTCCACGTCTACACGAATGGCATTTCAGATCTGGACTTGATCGCTACATATGGATCATCGGCATGATATATGCATATTTTCATCCCACTgtaattccagaaccatggtgctttcat--tttttccatatctcctctcgaaagac-gcaactaaatatattggggatttcag-----------------

upper sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G34410.1 (Arabidopsis thaliana), 5'ss of exon 9
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTATTTTCATCCAAATgtaa-tctcgaatac-tagcttttgtagtggtcattgggtaattttttttatataatagttggtccagctattttaaatttgaaatatttcaccatctcag
 || || || || || |   | ||||| ||||| |||||||| || ||||| |||||||| ||||| ||||||||||| ||||||||||| ||||| | ||||| ||| |||     ||| ||     | ||  ||   ||  | || | ||  |      | |  |  ||||||    |||| || ||    ||| ||||
TAAACCAGAACTACCACTTTTACATGAATGGCACTTCAGATCAGGACTTGACCGCTACATATGGATCATTGGAATGATATATGCCTATTTCCATCCCACTgtaactcttgaacctacagccttc----tcgttttttcata--tcttctcatgaaccctacgattaaaatatttt----ttgacatttt----catttcag

upper sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G46340.1 (Arabidopsis thaliana), 5'ss of exon 10
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTATTTTCATCCAAATgtaatctcgaatactagcttttgtagtggtcattgggtaattttttttatataatagttggtccagctattttaaatttgaaatatttcaccatctcag
 ||||| ||||| | |||  ||||||| ||||| || ||||| || |||||||||||||| ||||| || ||||||||||||||||||| ||| |||| |||||  ||   ||||  | ||| |    ||  || |    |  | |  || |||||             ||  ||| |||  ||  ||| | |      
CAAGCCCGATCTTCATCGGCTGCATGAATGGCACTTTAGATCAGGCCTTGATCGCTACATATGGATCATCGGAATGATTTATGCCTATTATCACCCAACTgtaagttct--tacttccatttttttccgttttttg----tagtgtcgatgtaataaac----------ttcaaaacttgggatcattctctag-----

upper sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 4
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTATTTTCATCCAAATgtaatctcgaatactagcttttgtagtggtcattgggtaattttttttatataatagttggtccagctattttaaatttgaaatatttcaccatctcag
 || |  | |||||||||| ||||||| |||||||| |||||||||||||||||||| || ||||| || |||||||| |||||||||| ||| || |||||||| |     |     |  |  | || | |||   ||  | || ||         |  |||||   | |   ||    | ||||||     ||| ||
TAAACAAGGTCTCCCTCGACTGCATGAATGGCATTTTAGATCTGGGCTTGATCGCTATATTTGGATCATCGGAATGATATATGCCTATTATCACCCTAATgtaatttttttcaagtattggtacaatgatgattttatagctcttctttc-------tccgtccactaactggtaa----atatattttttgttcttag

upper sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S74_21V6.1 (Physcomitrella patens), 5'ss of exon 9
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTATTTTCATCCAA----ATgtaatctcgaatactagctt-ttgtagtggtcattgggtaattttttttatataatagttggtccagctattttaaatttgaaatatttcaccatctcag-----------------------------------------------------------------
||||     |   |||    | || || |||||||||||||||||||| || || || |||||||| ||||| ||| | ||||||||||||||||| |    ||||  | | ||  ||   ||    ||||     | ||| |   ||   |    ||| |||  ||   ||  |||    | |||  || | ||  ||   |                                                                  
AAAGAGCCCTGCGCCTTTGCTTCACGAATGGCATTTCAGATCTGGGCTCGACCGATATATCTGGATTATTGGCATGCTCTATGCCTATTTTCATCCTACGgtatgtcgttttgaccaccttctaaccgtagaaa--aatggtttggttagatcccgtaagagtgagtgttgcc-tttccgctgtgacttactacagaattgtatttattgcaaaagtttgtaagtttcgcatgattgaacatctttatttgtgaactacatgtttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208134024|gb|GD926973.1|GD926973
EST:     ATCGCTACATCTGGATAATTGGAATGATTTATGCCTATTTTCATCCAAAT                         GTTGAGAAATGGATGGAAAAATTGGAAGAGAGTGATACCAAGAGGAGAGTT
genomic: ATCGCTACATCTGGATAATTGGAATGATTTATGCCTATTTTCATCCAAATgtaatctcga ... accatctcagGTTGAGAAATGGATGGAAAAATTGGAAGAGAGTGATACCAAGAGGAGAGTT
EST: gi|24136282|gb|BU926792.1|BU926792
EST:     ATCGCTACATCTGGATAATTGGAATGATTTATGCCTATTTTCATCCAAAT                         GTTGAGAAATGGATGGAAAAATTGGAAGAGAGTGATACCAAGAGGAGAGTT
genomic: ATCGCTACATCTGGATAATTGGAATGATTTATGCCTATTTTCATCCAAATgtaatctcga ... accatctcagGTTGAGAAATGGATGGAAAAATTGGAAGAGAGTGATACCAAGAGGAGAGTT
EST: gi|193338485|gb|FK303412.1|FK303412
EST:     ATCGCTACATCTGGATAATTGGAATGATTTATGCCTACTTTCATCCAAAT                         GTTGAGAAATGGATGGAAAA-TTGGAAGAGA
genomic: ATCGCTACATCTGGATAATTGGAATGATTTATGCCTATTTTCATCCAAATgtaatctcga ... accatctcagGTTGAGAAATGGATGGAAAAATTGGAAGAGA
EST: gi|208161302|gb|GD963476.1|GD963476
EST:     ATCGCTACATCTGGATAATTGGAATGATTTATGCCTATTTTCATCCAAAT                         GTTGAGAAATGGATGGAAAAATTGGAAGAGAGTGATACCAAGAGGAGAGTT
genomic: ATCGCTACATCTGGATAATTGGAATGATTTATGCCTATTTTCATCCAAATgtaatctcga ... accatctcagGTTGAGAAATGGATGGAAAAATTGGAAGAGAGTGATACCAAGAGGAGAGTT
EST: gi|192300083|gb|FG991873.1|FG991873
EST:     CTGGATAATTGGAATGATTTATGCCTATTTTCATCCAAAT                         GTTGAGAAATGGATGGAAAAATTGGAAGAGAGTGATACCAAGAGGAGAGTT
genomic: CTGGATAATTGGAATGATTTATGCCTATTTTCATCCAAATgtaatctcga ... accatctcagGTTGAGAAATGGATGGAAAAATTGGAAGAGAGTGATACCAAGAGGAGAGTT
EST: gi|192332805|gb|FK026806.1|FK026806
EST:     ATCGCTACATCTGGATAATTGGAATGATTTATGCCTATTTTCATCCAAAT                         GTTGAGAAATGGATGGAAAAATTGGAAGAGAGTGATACCAAGAGGAGAGTT
genomic: ATCGCTACATCTGGATAATTGGAATGATTTATGCCTATTTTCATCCAAATgtaatctcga ... accatctcagGTTGAGAAATGGATGGAAAAATTGGAAGAGAGTGATACCAAGAGGAGAGTT
EST: gi|193676073|gb|FK618281.1|FK618281
EST:     ATCGCTACATCTGGATAATTGGAATGATTTATGCCTATTTTCATCCAAAT                         GTTGAGAAATGGATGGAAAAATTGGAAGAGAGTGATACCAAGAGGAGAGTT
genomic: ATCGCTACATCTGGATAATTGGAATGATTTATGCCTATTTTCATCCAAATgtaatctcga ... accatctcagGTTGAGAAATGGATGGAAAAATTGGAAGAGAGTGATACCAAGAGGAGAGTT