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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTCCCTACAATATACACAGACATTAGAGGCCGTGTTATCCATTCAAATCAGgtatggttgatatcatgaacatactgtcgtgtcatgtttcatttgatagtgcttatgtagcataataaatgttattgcacag

Basic information

species Glycine max
transcript GLYMA05G24610.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G24610.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G161019_T03 (Zea mays), 5'ss of exon 10
GTGGTCCCTACAATATACACAGACATTAGAGGCCGTGTTATCCATTCAAATCAGgtatggttgatatcatgaacatac-tgtcgtgtcatgtttcatt--tgatagtgcttatgtagcataataaatgttattgcacag
|| ||||||||||||||||| || |||||||| || | ||| |||||||| ||||| || | ||  |  |||| ||      ||| | || || | |      || |   | | |   |   | | |   |        
GTTGTCCCTACAATATACACTGATATTAGAGGACGCGGTATTCATTCAAACCAGgtttg-tggaactattgaatatgtgcaacgttttatattccctcaacattaatatctgtatgttactttcatttccag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12772634|gb|BG237488.1|BG237488
EST:     TCCCTACAATATACACAGACATTAGAGGTCGTGTTATCCATTCAAATCAG                         TATTCTGTGACGGAGCATTTCAAGAGTTCAGAGCTGGGTGTTGCAGTTCCT
genomic: TCCCTACAATATACACAGACATTAGAGGCCGTGTTATCCATTCAAATCAGgtatggttga ... tattgcacagTATTCTGTGACTGAGCATTTCAAGAGTTCAGAGCTGGGTGTTGCAGTTCCT
EST: gi|22929560|gb|BU546699.1|BU546699
EST:     TCNCTACAATATACACAGACATTAGAGGCCGTGTTATCCATTCAAATCAG                         TATTCTGTGACTGAGCATTTCAAGAGTTCAGAGCTGGGTGTTGCAGTTCCT
genomic: TCCCTACAATATACACAGACATTAGAGGCCGTGTTATCCATTCAAATCAGgtatggttga ... tattgcacagTATTCTGTGACTGAGCATTTCAAGAGTTCAGAGCTGGGTGTTGCAGTTCCT
EST: gi|7233507|gb|AW568852.1|AW568852
EST:     TCCCTACAATATACACAGACATTAGAGGCCGTGTTATCCATTCAAATCAG                         TATTCTGTGACTGAGCATTTCAAGAGTTCAGAGCTGGGTGTTGCAGTTCCT
genomic: TCCCTACAATATACACAGACATTAGAGGCCGTGTTATCCATTCAAATCAGgtatggttga ... tattgcacagTATTCTGTGACTGAGCATTTCAAGAGTTCAGAGCTGGGTGTTGCAGTTCCT