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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAAAGATGGAACATTCCTGGAAGAACCTGGATCTGGTGCTGTGGCAACAATTGATAACAAAAAGGTTTCTGTTGGGACGTTGGAATGGATTACCAGgtacttggttatttgcccaaggatacacaatatagtatgttcctcaaaaattttaaatatttcttattaatttattataaacaggatatttccttcaaac...

Basic information

species Glycine max
transcript GLYMA05G24520.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G24520.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os08g37950.1 (Oryza sativa), 5'ss of exon 13
GTAAAAGATGGAACATTCCTGGAAGAACCTGGATCTGGTGCTGTGGCAACAATTGATAACAAAAAGGTTTCTGTTGGGACGTTGGAATGGATTACCAGgtac---ttggttattt---gcccaaggatacacaatatagtatgttcctc----aaaaattttaaatatttc--ttattaatttattataaacaggatatttccttcaaac------------------------------------------------------------------------------------
| |||||||||| | ||| ||||||||||||| |||||||||||||| || ||||   | ||| ||||||| ||||| ||  | || ||||| |  ||||||   |   ||||||   |  ||    |    |||||    ||| | ||    | ||| |||| | | |||  || |  | |  | |         |  |  ||| |  |                                                                                    
GCAAAAGATGGATCCTTCATGGAAGAACCTGGGTCTGGTGCTGTGGCGACCATTGGCGAGAAACAGGTTTCAGTTGGAACACTTGATTGGATCAGGAGgtacaaatgaattatttattgtgcagttgtgatgaatatgccttgtccttctgatagaaaatttacaaacttcagttctctactcttcacgctatctgttatgtcttaagtctactattttcttagttctagcaatacttaatgatgtactaaatatgatcactgagggactctgctcactacctaattgtttcag

upper sequence: GLYMA05G24520.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G315931_T01 (Zea mays), 5'ss of exon 13
GTAAAAGATGGAACATTCCTGGAAGAACCTGGATCTGGTGCTGTGGCAACAATTGATAACAAAAAGGTTTCTGTTGGGACGTTGGAATGGATTACCAGgtactt---ggttatttgc-ccaaggatacacaatatagtatgttcctcaaaaattttaaatatttcttattaatttattataaacaggatatttccttcaaac-------------------------------------------------------------------------------------
| ||| |||||| | ||| |||||||||| ||||||||||||||||| || |||| | | ||  ||||||||||||| || || || |||||||  |||||| |    ||| ||||  | |  | ||  |  |||  ||  |||   || ||  | | | | |||| ||   | | || |     | |||  |  |  |||                                                                                      
GCAAATGATGGATCCTTCATGGAAGAACCAGGATCTGGTGCTGTGGCTACCATTGGTGAGAAGCAGGTTTCTGTTGGAACATTAGATTGGATTAGAAGgtacatatgagttttttgttctacagctatgccctatgctaaattcactaacaacatgagacacttctaatcg-tctcttgttcctggtataccttatgtaaatgctatctgttttaaagttttctccctgcactgtcttgtaaaagtgtatgttgagcctgtttgctagtaaaattataatatttcag

upper sequence: GLYMA05G24520.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv12s0142g00330.t01 (Vitis vinifera), 5'ss of exon 5
GTAAAAGATGGAACATTCCTGGAAGAACCTGGATCTGGTGCTGTGGCAACAATTGATAACAAAAAGGTTTCTGTTGGGACGTTGGAATGGATTACCAGgtacttggttatttgcccaaggatacaca--atatagtatgttcctcaaaaattttaaatatttcttatt--aattt--attataaacaggatatttccttcaaac
|||   |||||||||||| ||||||||||||| ||||||||||| |||||  |||| || ||||||||||||||||| || || || ||| ||   ||||| |  | ||||   |     ||||     | || |    |   ||| ||| | | | ||      |||  |||||  ||| |||  |  | || |  |      
GTAGTGGATGGAACATTCGTGGAAGAACCTGGGTCTGGTGCTGTAGCAACTGTTGAGAATAAAAAGGTTTCTGTTGGTACATTTGACTGGGTTCAAAGgtattgtggtattgatctcttcatactgggcacatggctcatatatcacaaaatctgattaccctaaattggaatttgtattttaatgaaaaaatgtttt------