Sequence
atgc intronic sequence ATGC exonic sequenceCAGACACCACCAACATGGAAGGTGGCAAGCTCGAATTGGTAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTTAgtgagttctttcgtactcgttgtataactctttttgttttggttctgaatgtacttttatttttttaccttatttgcatgcatcaatgtgttcatgtacc...
Basic information
species | Glycine max |
transcript | GLYMA05G22970.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G22970.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G021573_T01 (Zea mays), 5'ss of exon 7
CAGACACCACCAACATGGAAGGTGGCAAGCTCGAATTGGTAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTTAgtgagt-----tctttcgtactcgttgtataact--ctttttgttttggttctgaatgtacttttatt-tttttaccttatttgcatgcatcaatgtgttcatgtacc
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---GCACCACCAGCAAGGAAGATGGCAGTCTCGGATTGGAAGAGTCGCTGGAAACAAGGATCTATACCTCGGCACTTTCAgtaagaaaagatcgttccatttggctgcagaagtagcttttagcgctaatcctttggcggtgtctgttgtactaatgtcgattgtct-cgtcaaagtacaa-------
upper sequence: GLYMA05G22970.1 (Glycine max), 5'ss of exon 10
lower sequence: AT4G37750.1 (Arabidopsis thaliana), 5'ss of exon 7
CAGACACCACCAACATGGAAGGTGGCAAGCTCGAATTGGTAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTTAgtgagttctttcgtactcgttgtataactctttttgttttggttctgaatgtacttttatttttttaccttatttgcatgcatcaatgtgttcatgtacc
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---ACATCACCAGCATGGAAGGTGGCAAGCACGGATTGGTAGAGTCGCTGGAAACAAAGATCTCTACCTTGGAACTTTTGgtaattcatcatgccgatgattt-tgattgttaaaacttaacattttcaattgcttgtgtcttacgaaatcttttgacactatcatag------------
upper sequence: GLYMA05G22970.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv07s0151g00440.t01 (Vitis vinifera), 5'ss of exon 7
CAGACACCACCAACATGGAAGGTGGCAAGCTCGAATTGGTAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTTAgtgagttctttcgtactcgttgtataactctttttgttttggttctgaatgtacttttatttttttaccttatttgcatgcatcaat-gtgttcatgtacc
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---ACATCACCAACATGGACGGTGGCAAGCTCGAATTGGCAGAGTTGCAGGGAACAAGGACCTTTATCTTGGGACATTCAgtgagttttttttttttctcaatctttagtttcctgggcaagaacctttcatgccattgttacgt-attgtggttgtgttcttcactcatattcttaaatcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14126414|gb|BG790852.1|BG790852EST: TCGAATTGGTAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTTA GTACACAAGAGGAAGCAGCTGAAGCCTATGATATTGCTGCTATAAAATTCC
genomic: TCGAATTGGTAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTTAgtgagttctt ... taaactctagGTACACAAGAGGAAGCAGCTGAAGCCTATGATATTGCTGCTATAAAATTCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGACACCACCAACATGGAAGGTGGCAAGCTCGAATTGGTAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTTAgtgagttctttcgtactcgttgtataactctttttgttttggttctgaatgtacttttatttttttaccttatttgcatgcatcaatgtgttcatgtacc
- - - - - - - - - - - - - - - - - - - - - - - GCTGGA