1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ACATGCTGAGAAGTATGTTAGAAGGGGTAGATTAGACTGGCCTGAGGGTGCAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgttggtttgattatttgctttctgattttaactatataaagcaatttgaatggtttatattgactttagtcgacattttcccctcccaaatatatgtag
species | Glycine max |
transcript | GLYMA05G02740.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTEST: gi|254324743|gb|GR834168.1|GR834168
genomic: CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgttggtttga ... atatatgtagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCT
EST: CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTCEST: gi|207786906|gb|GD755379.1|GD755379
genomic: CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgttggtttga ... atatatgtagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: TCCTAGGCTTCAG AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTCEST: gi|193542820|gb|FK504141.1|FK504141
genomic: TCCTAGGCTTCAGgttggtttga ... atatatgtagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: AACCTCGAGGGAGGAATATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTCEST: gi|254323902|gb|GR840435.1|GR840435
genomic: AACCTCGAGGGA-GAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgttggtttga ... atatatgtagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTCEST: gi|193511380|gb|FK470833.1|FK470833
genomic: CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgttggtttga ... atatatgtagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: AACCTC-AGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTCEST: gi|207792096|gb|GD766550.1|GD766550
genomic: AACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgttggtttga ... atatatgtagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTCEST: gi|193532781|gb|FK488471.1|FK488471
genomic: CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgttggtttga ... atatatgtagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTCEST: gi|193694771|gb|FK632911.1|FK632911
genomic: CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgttggtttga ... atatatgtagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACNTCTCEST: gi|58016463|gb|CX703205.1|CX703205
genomic: CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgttggtttga ... atatatgtagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgttggtttga ... atatatgtagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACATGCTGAGAAGTATGTTAGAAGGGGTAGATTAGACTGGCCTGAGGGTGCAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgttggtttgattatttgctttctgattttaactatataaagcaatttgaatggtttatattgactttagtcgacattttcccctcccaaatatatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC