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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGATTACATAGCCTGGGTCTGTGATCAGGATGCATATGCATGCAGTGGTCAGAAATGCTCGGCACAGTCATTGTTATTTATGCATGAGgtctgttacattggttattatgagaactttgttcatgattaaatgtccccaagaactacggggaagatgtacataagtacattgggtttttatttttaatatgcatgttacgagtttatgtatcgtgtctttactaacttcatggtttggatttcccttgttcag

Basic information

species Glycine max
transcript GLYMA05G01290.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G01290.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os05g45960.1 (Oryza sativa), 5'ss of exon 10
GAAGATTACATAGCCTGGGTCTGTGATCAGGATGCATATGCATGCAGTGGTCAGAAATGCTCGGCACAGTCATTGTTATTTATGCATGAGgt--ctgttacattggttattatgagaactttgttcatgattaaatgtccccaagaactacggggaagatgtacataagtacattgggtttttatttttaatatgcatgttacgagtttatgtatcgtgtctttactaacttcatggtttggatttcccttgttcag
|  |||||||| || ||||| || || |||||||| ||||| |||||||||||||| ||||| || |||||  |  |||| |||||  ||||    || |   |   |||||||     | | | | ||| |   || |    |  |  ||     | || ||  |   ||  ||   |  || ||||| ||                                                                 
GTTGATTACATTGCATGGGTTTGCGACCAGGATGCTTATGCTTGCAGTGGTCAGAAGTGCTCTGCTCAGTCTATTCTATTCATGCACAAGgtaatagtgaagattagtattatgttccttctttgcttgagtctttgactgtgatcatgactcttgacatataact---tatgttacatgcttcttttttatc----------------------------------------------------------------

upper sequence: GLYMA05G01290.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv17s0000g05800.t01 (Vitis vinifera), 5'ss of exon 11
GAAGATTACATAGCCTGGGTCTGTGATCAGGATGCATATGCATGCAGTGGTCAGAAATGCTCGGCACAGTCATTGTTATTTATGCATGAGgtctgttacattggttattatgagaactttgttcatgattaaatgtccccaagaactacggggaagatgtacataagtacattgggtttttatttttaatatgcatgttacgagtttatgtatcgtgtctttactaacttcatggtttggatttcccttgttcag
|  || ||  | || |||||||||||||| |||||||||||||||||||| || || ||||| || |||||| |  |||| |||||||||||  | | |     | | | ||| |||| |||   |  ||  || |    |     |  |  ||  |||    || |   |     || ||  | ||   ||   | |                                                         
GTGGACTATGTTGCATGGGTCTGTGATCAAGATGCATATGCATGCAGTGGACAAAAGTGCTCTGCGCAGTCAATAGTATTCATGCATGAGgttagctgc----ttcactctgacaactctgtaggtt-ttgcatttgttta----tttggaagattatggttgtaggctgaagtaattgtt-ctcttggcatttctctct-------------------------------------------------------

upper sequence: GLYMA05G01290.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ29772 (Selaginella moellendorffii), 5'ss of exon 10
GAAGATTACATAGCCTGGGTCTGTGATCAGGATGCATATGCATGCAGTGGTCAGAAATGCTCGGCACAGTCATTGTTATTTATGCATGAGgtctgttacattggttattatgagaactttgttcatgattaaatgtccccaagaactacggggaagatgtacataagtacattgggtttttatttttaatatgcatgttacgagtttatgtatcgtgtctttactaacttcatggtttggatttcccttgttcag
   || ||| | || ||||| || || |||||||||||||| |||||||||||||| || |||||||||||  |  | || ||||| ||||||  |    ||  || |||    ||  | |     | | ||| | |      |  | | |                                                                                                        
ATTGACTACGTTGCATGGGTTTGCGACCAGGATGCATATGCGTGCAGTGGTCAGAAGTGTTCGGCACAGTCCATTCTTTTCATGCACGAGgtcgatactgtt--ttctta----aagctagcaggagctgaaaagccgt----agttgcag--------------------------------------------------------------------------------------------------------

upper sequence: GLYMA05G01290.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ08918 (Selaginella moellendorffii), 5'ss of exon 10
GAAGATTACATAGCCTGGGTCTGTGATCAGGATGCATATGCATGCAGTGGTCAGAAATGCTCGGCACAGTCATTGTTATTTATGCATGAGgtctgttacattggttattatgagaactttgttcatgattaaatgtccccaagaactacggggaagatgtacataagtacattgggtttttatttttaatatgcatgttacgagtttatgtatcgtgtctttactaacttcatggtttggatttcccttgttcag
   || ||| | || ||||| || || |||||||||||||| |||||||||||||| || |||||||||||  |  | || ||||| ||||||  |    ||  || |||    || || |     | ||||| | |      |  | | |                                                                                                        
ATTGACTACGTTGCATGGGTTTGCGACCAGGATGCATATGCGTGCAGTGGTCAGAAGTGTTCGGCACAGTCCATTCTTTTCATGCACGAGgtcgatactgtt--ttctta----aagttagcaggagcttaaaagccgt----agttgcag--------------------------------------------------------------------------------------------------------