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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTGgtaattgctcactaacttttcatgtcttgctttcatctgagtaaaccctggtttacttagctattttgtatattatctatctctgtgtaaagtaataacc...

Basic information

species Glycine max
transcript GLYMA04G40750.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G40750.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv16s0098g01040.t01 (Vitis vinifera), 5'ss of exon 9
GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTGgtaattgctcactaacttttcatgtcttgctttcatctgagtaaaccctggtttacttagctattttgtatattatctatctctgtgtaaagtaataacc-----
||||||||||||||||| ||||| || || ||||| || ||||||||||| ||||| ||||| | | |||||| | |  || | || || |  | |   |  ||| |   | | | ||    |  |||  | || |||| |  ||  |   |  ||| ||||  |  |      
GTTCATCGCTTGAGGCTGCTTGGAGACTATCATCACTCTACTCGAATTGCTTTTGTCGAGTTTGTAATGgtaactacctacaagctcttaaactttctatgccatatcctttacctctcaggtg-ttactttttctgta-acaatgca---ccatgtgaagttctccctccttt

upper sequence: GLYMA04G40750.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ23027 (Selaginella moellendorffii), 5'ss of exon 8
GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTGgtaattgctca--ctaacttttcatgtcttgctttcatctgagtaaaccctggtttacttagctattttgtatattatctatctctgtgtaaagtaataacc
||    ||||||||  | || || || ||||||||||| |||||||| || |||||||||||||||||||| |  |   |   |   |  |   |   |  || | |  |   | | |||  ||  |                                            
GTGTCGCGCTTGAGATTGCTGGGCGACTACCATCATTCTACTCGAATAGCGTTTGTTGAGTTCGCACTGgtgagcgaatagatttggtccttgggagctcgttgcttacggtcacaacctctttcgcag------------------------------------------

upper sequence: GLYMA04G40750.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ30509 (Selaginella moellendorffii), 5'ss of exon 8
GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTGgtaattgctca--ctaacttttcatgtcttgctttcatctgagtaaaccctggtttacttagctattttgtatattatctatctctgtgtaaagtaataacc
||    ||||||||  | || || || ||||||||||| |||||||| || |||||||||||||||||||| |  |   |   |   |  |   |   |  || | |  ||  | | |||  ||  |                                            
GTGTCGCGCTTGAGATTGCTGGGCGACTACCATCATTCTACTCGAATAGCGTTTGTTGAGTTCGCACTGgtgagcgaatagatttggtccttgggagctcgttgcttacgatcacaacctctttcgcag------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7285563|gb|AW598050.1|AW598050
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTG                         GCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTGgtaattgctc ... atccttgcagGCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|193307091|gb|FK268831.1|FK268831
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTG                         GCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTGgtaattgctc ... atccttgcagGCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|18038768|gb|BM307062.1|BM307062
EST:     TGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTG                         GCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTGgtaattgctc ... atccttgcagGCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|9203628|gb|BE329852.1|BE329852
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTG                         GCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTGgtaattgctc ... atccttgcagGCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|193726084|gb|FK658964.1|FK658964
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTCGAGTTCGCACTG                         GCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTGgtaattgctc ... atccttgcagGCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|58018945|gb|CX705687.1|CX705687
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTG                         GCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTGgtaattgctc ... atccttgcagGCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|58019174|gb|CX705916.1|CX705916
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTG                         GCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTGgtaattgctc ... atccttgcagGCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|151412507|gb|EV282319.1|EV282319
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTG                         GCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTGgtaattgctc ... atccttgcagGCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA