1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ATTCGGAAATTGGATGACACTGAGTTTAGAAATCCCTGGGCGAGAGCTTATATTCGGgtaatttctcatctttccactggcgtttataattttttaaccccattaagattctactgttgtatcctaagtaattcctcaatgttttagatctttcaaa...
species | Glycine max |
transcript | GLYMA04G40740.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AATTGGATGACACTGAGTTTAGAAATCCCTGGGCGAGAGCTTATATTCGG GTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCGCAGCAGGAGCCCCAGCEST: gi|19453352|gb|BM954762.1|BM954762
genomic: AATTGGATGACACTGAGTTTAGAAATCCCTGGGCGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCGCAGCAGGAGCCCCAGC
EST: AATTGGATGACACTGAGTTTAGAAATCCCTGGGCGAGAGCTTATATTCGG GTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCGCAGCAGGAGCCCCAGCEST: gi|19453608|gb|BM955018.1|BM955018
genomic: AATTGGATGACACTGAGTTTAGAAATCCCTGGGCGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCGCAGCAGGAGCCCCAGC
EST: AATTGGATGACACTGAGTTTAGAAATCCCTGGGCGAGAGCTTATATTCGG GTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCGCAGCAGGAGCCCCAGC
genomic: AATTGGATGACACTGAGTTTAGAAATCCCTGGGCGAGAGCTTATATTCGGgtaatttctc ... gtttgtacagGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCGCAGCAGGAGCCCCAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCGGAAATTGGATGACACTGAGTTTAGAAATCCCTGGGCGAGAGCTTATATTCGGgtaatttctcatctttccactggcgtttataattttttaaccccattaagattctactgttgtatcctaagtaattcctcaatgttttagatctttcaaa
- - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - GAGCTT