1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TCCCCCATCTACACCAATATACATTGCAGCAGGAGAGATCTATGGTGGTAATACTCATCTTTCGGAGCTCTCATCCCGCTACCCTAATCTAATCTTTAAGgtttgtaaattgttttctttgtccaataagtagtcccatagcacataatctgtgagtgaggtgcaatgacagtgattaattgattggtaaatggcaacag
species | Glycine max |
transcript | GLYMA04G39170.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ATACTCATCTTTCGGAGCTCTCATCCCGCTACCCTAATCTAATCTTTAAG GAATCCCTTGCAACTCCTGAAGAGCTGAAAGATTTTGCCAATCACGCTTCCEST: gi|12489962|gb|BG043483.1|BG043483
genomic: ATACTCATCTTTCGGAGCTCTCATCCCGCTACCCTAATCTAATCTTTAAGgtttgtaaat ... atggcaacagGAATCCCTTGCAACTCCTGAAGAGCTGAAAGATTTTGCCAATCACGCTTCC
EST: ATACTCATCTTTCGGAGCTCTCATCCCGCTACCCTAATCTAATCTTTAAG GAATCCCTTGCAACTCCTGAAGAGCTGAAAGATTTTGCCAATCACGCTTCCEST: gi|120494144|gb|EH222311.1|EH222311
genomic: ATACTCATCTTTCGGAGCTCTCATCCCGCTACCCTAATCTAATCTTTAAGgtttgtaaat ... atggcaacagGAATCCCTTGCAACTCCTGAAGAGCTGAAAGATTTTGCCAATCACGCTTCC
EST: TAACTCATCTTTCGGAGCTCTCATCCCGCTACCCTAATCTAATCTTTAAG GAATCCCTTGCAACTCCTGAAGAGCTGAAAGATTTTGCCAATCACGCTTCCEST: gi|298194946|gb|HO043418.1|HO043418
genomic: T-ACTCATCTTTCGGAGCTCTCATCCCGCTACCCTAATCTAATCTTTAAGgtttgtaaat ... atggcaacagGAATCCCTTGCAACTCCTGAAGAGCTGAAAGATTTTGCCAATCACGCTTCC
EST: ATACTCATCTTTCGGAGCTCTCATCCCGCTACCCTAATCTAATCTTTAAG GAATCCCTTGCAACTCCTGAAGAGCTGAAAGATTTTGCCAATCACGCCTCC
genomic: ATACTCATCTTTCGGAGCTCTCATCCCGCTACCCTAATCTAATCTTTAAGgtttgtaaat ... atggcaacagGAATCCCTTGCAACTCCTGAAGAGCTGAAAGATTTTGCCAATCACGCTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCCCCATCTACACCAATATACATTGCAGCAGGAGAGATCTATGGTGGTAATACTCATCTTTCGGAGCTCTCATCCCGCTACCCTAATCTAATCTTTAAGgtttgtaaattgttttctttgtccaataagtagtcccatagcacataatctgtgagtgaggtgcaatgacagtgattaattgattggtaaatggcaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT