1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ACCTAATGAAGTAATACATCATGATAATGCACGCATGGCAATTCCGCACATGCCAAATTTGGAATCAGCAGAATCGACAGCTCCAGCTGCTGCCGAACCAgtatgtttccttgctcctccttcttagctttgtattgccatagattcatgttgagatcactaagcttatgagattaatgtctttccttttttcaag
species | Glycine max |
transcript | GLYMA04G38830.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TGCCAAATTTGGAATCAGCAGAATCGACAGCTCCAGCTGCTGCCGAACCA GTATGCCCCATTTGCCTAACCAATCCGAAGGACATGGCTTTTGGATGTGGTEST: gi|21677101|gb|BQ629452.1|BQ629452
genomic: TGCCAAATTTGGAATCAGCAGAATCGACAGCTCCAGCTGCTGCCGAACCAgtatgtttcc ... ttttttcaagGTATGCCCCATTTGCCTAACCAATCCGAAGGACATGGCTTTTGGATGTGGT
EST: TGCCAAATTTGGAATCAGCAGAATCGACAGCTCCAGCTGCTGCCGAACCA GTATGCCCCATTTGCCTAACCAATCCGAAGGACATGGCTTTTGGATGTGGTEST: gi|15000509|gb|BI321323.1|BI321323
genomic: TGCCAAATTTGGAATCAGCAGAATCGACAGCTCCAGCTGCTGCCGAACCAgtatgtttcc ... ttttttcaagGTATGCCCCATTTGCCTAACCAATCCGAAGGACATGGCTTTTGGATGTGGT
EST: TGCCAAATTTGGAATCAGCAGAATCGACAGCTCCAGCTGCTGCCGAACCA GTATGCCCCATTTGCCTAACCAATCCGAAGGACATGGCTTTTGGATGTGGTEST: gi|23732040|gb|BU764176.1|BU764176
genomic: TGCCAAATTTGGAATCAGCAGAATCGACAGCTCCAGCTGCTGCCGAACCAgtatgtttcc ... ttttttcaagGTATGCCCCATTTGCCTAACCAATCCGAAGGACATGGCTTTTGGATGTGGT
EST: TGCCAAATTTGGAATCAGCAGAATCGACAGCTCCAGCTGCTGCCGAACCA GTATGCCCCATTTGCCTAACCAATCCGAAGGACATGGCTTTTGGATGTGGT
genomic: TGCCAAATTTGGAATCAGCAGAATCGACAGCTCCAGCTGCTGCCGAACCAgtatgtttcc ... ttttttcaagGTATGCCCCATTTGCCTAACCAATCCGAAGGACATGGCTTTTGGATGTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCTAATGAAGTAATACATCATGATAATGCACGCATGGCAATTCCGCACATGCCAAATTTGGAATCAGCAGAATCGACAGCTCCAGCTGCTGCCGAACCAgtatgtttccttgctcctccttcttagctttgtattgccatagattcatgttgagatcactaagcttatgagattaatgtctttccttttttcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC