1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GACATGATGACCTTCTTGCTGGCAGAGTTACAATGACCACCACTCGATTCGACCATGAAGAAGCAGAGGAGGAAGAGGAGCCTGAACAGTTAGTCCGAAGgtgccttccctgtttttggaattcaatttattacccttttgtaacgaaggataatactaaattttcagaattctttaatctctgtatgtctaattccttgcag
species | Glycine max |
transcript | GLYMA04G38320.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GGAGCCTGAACAGTTAGTCCGAAG ATTACGGAAGGGAAAGGCTTGTGCAAGGCCTGAAGTATGAGGAGACTGAAAEST: gi|17022959|gb|BM093993.1|BM093993
genomic: GGAGCCTGAACAGTTAGTCCGAAGgtgccttccc ... ttccttgcagATTACGGAAGGGAAAGGCTTGTGCAAGGCCTGAAG-ATGAGGAGACTGAAA
EST: GACCATGAAGAAGCAGAGGAGGAAGAGGAGCCTGAACAGTTAGTCCGAAG ATTACGGAAGGGAAAGGCTTGTGCAAGGCCTGAAGATGAGGAGACTGAAAC
genomic: GACCATGAAGAAGCAGAGGAGGAAGAGGAGCCTGAACAGTTAGTCCGAAGgtgccttccc ... ttccttgcagATTACGGAAGGGAAAGGCTTGTGCAAGGCCTGAAGATGAGGAGACTGAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACATGATGACCTTCTTGCTGGCAGAGTTACAATGACCACCACTCGATTCGACCATGAAGAAGCAGAGGAGGAAGAGGAGCCTGAACAGTTAGTCCGAAGgtgccttccctgtttttggaattcaatttattacccttttgtaacgaaggataatactaaattttcagaattctttaatctctgtatgtctaattccttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG