1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ACATGCAGAGAAGTATGTTCGAAGGGGTAGGTTGGACTGGCCAGAGGGTGCAATCTCACGAGAGAGTATTAAAGCTGTTATGAAGCTTCCCCGACTACAGgtttgttctcaaatctgtcacggaaaaaatttatcatgatttcagattttactaaatgaagcaatgttgactgtagagtagttcatgttggcttctcacatttactcaacttttttccaaataattgcag
species | Glycine max |
transcript | GLYMA04G36360.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CAATCTCACGAGAGAGTATTAAAGCTGTTATGAAGCTTCCCCGACTACAG AACCTTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTTEST: gi|254346650|gb|GR856372.1|GR856372
genomic: CAATCTCACGAGAGAGTATTAAAGCTGTTATGAAGCTTCCCCGACTACAGgtttgttctc ... ataattgcagAACCTTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTT
EST: CAATCTCACGAGAGAGTATTAAAGCTGTTATGAAGCTTCCCCGACTACAG AACCTTATAATGCAGCATGTTGATCATTCAGCTGGAGATTTTATACATTTTEST: gi|254346649|gb|GR856371.1|GR856371
genomic: CAATCTCACGAGAGAGTATTAAAGCTGTTATGAAGCTTCCCCGACTACAGgtttgttctc ... ataattgcagAACCTTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTT
EST: CAATCTCACGAGAGAGTATTAAAGCTGTTATGAAGCTTCCCCGACTACAG AACCTTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTTEST: gi|58021621|gb|CX708362.1|CX708362
genomic: CAATCTCACGAGAGAGTATTAAAGCTGTTATGAAGCTTCCCCGACTACAGgtttgttctc ... ataattgcagAACCTTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTT
EST: CAATCTCACGAGAGAGTATTAAAGCTGTTATGAAGCTTCCCCGACTACAG AACCTTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTTEST: gi|8401586|gb|BE057150.1|BE057150
genomic: CAATCTCACGAGAGAGTATTAAAGCTGTTATGAAGCTTCCCCGACTACAGgtttgttctc ... ataattgcagAACCTTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTT
EST: CAATCTCACGAGAGAGTATTAAAGCTGTTATGAAGCTTCCCCGACTACAG AACCTTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTT
genomic: CAATCTCACGAGAGAGTATTAAAGCTGTTATGAAGCTTCCCCGACTACAGgtttgttctc ... ataattgcagAACCTTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACATGCAGAGAAGTATGTTCGAAGGGGTAGGTTGGACTGGCCAGAGGGTGCAATCTCACGAGAGAGTATTAAAGCTGTTATGAAGCTTCCCCGACTACAGgtttgttctcaaatctgtcacggaaaaaatttatcatgatttcagattttactaaatgaagcaatgttgactgtagagtagttcatgttggcttctcacatttactcaacttttttccaaataattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC