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TTAACCTGGGGAAACTGTACGAGAAGATCGGCTTTAACAAAGAAATTATATCAAGGGGAAGATATGCTGAGCTCCTTGCTGCTGAGCAACGTCCTTTCAGgtaaatattgtttcttcatttccttgtttagagattctagtggataaggagagaatattaggcagtgtatgagtgtaatgtgccatttgatatctcaaca...
species | Glycine max |
transcript | GLYMA04G31180.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TCAAGGGGAAGATATGCTGAGCTCCTTGCTGCTGAGCAACGTCCTTTCAG ACCAGATGAAGCAGAGCTATTTGCCAAATCTGCTCAGCATGCTTATAAACAEST: gi|58022499|gb|CX709240.1|CX709240
genomic: TCAAGGGGAAGATATGCTGAGCTCCTTGCTGCTGAGCAACGTCCTTTCAGgtaaatattg ... tttggtacagACCAGATGAAGCAGAGCTATTTGCCAAATCTGCTCAGCATGCTTATAAACA
EST: CAAGGGGGAAGATATGCTGAGCTCCTTGCTGCTGAGCAACGTCCTTTCAG ACCAGATGAAGCAGAGCTATTTGCCAAATCTGCTCAGCATGCTTATAAACAEST: gi|209710229|gb|BW658925.1|BW658925
genomic: CAA-GGGGAAGATATGCTGAGCTCCTTGCTGCTGAGCAACGTCCTTTCAGgtaaatattg ... tttggtacagACCAGATGAAGCAGAGCTATTTGCCAAATCTGCTCAGCATGCTTATAAACA
EST: TCAAGGGGAAGATATGCTGAGCTCCTTGCTGCTGAGCAACGTCCTTTCAG ACCAGATGAAGCAGAGCTATTTGCCAAATCTGCTCAGCATGCTTATAAACAEST: gi|58014942|gb|CX701684.1|CX701684
genomic: TCAAGGGGAAGATATGCTGAGCTCCTTGCTGCTGAGCAACGTCCTTTCAGgtaaatattg ... tttggtacagACCAGATGAAGCAGAGCTATTTGCCAAATCTGCTCAGCATGCTTATAAACA
EST: TCAAGGGGAAGATATGCTGAGCTCCTTGCTGCTGAGCAACGTCCTTTCAG ACCAGATGAAGCAGAGCTATTTGCCAAATCTGCTCAGCATGCTTATAAACAEST: gi|21889311|gb|BQ742524.1|BQ742524
genomic: TCAAGGGGAAGATATGCTGAGCTCCTTGCTGCTGAGCAACGTCCTTTCAGgtaaatattg ... tttggtacagACCAGATGAAGCAGAGCTATTTGCCAAATCTGCTCAGCATGCTTATAAACA
EST: TCAAGGGGAAGATATGCTGAGCTCCTTGCTGCTGAGCAACGTCCTTTCAG ACCAGATGAAGCAGAGCTATTTGCCAAATCTGCTCAGCATGCTTATAAACA
genomic: TCAAGGGGAAGATATGCTGAGCTCCTTGCTGCTGAGCAACGTCCTTTCAGgtaaatattg ... tttggtacagACCAGATGAAGCAGAGCTATTTGCCAAATCTGCTCAGCATGCTTATAAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTAACCTGGGGAAACTGTACGAGAAGATCGGCTTTAACAAAGAAATTATATCAAGGGGAAGATATGCTGAGCTCCTTGCTGCTGAGCAACGTCCTTTCAGgtaaatattgtttcttcatttccttgtttagagattctagtggataaggagagaatattaggcagtgtatgagtgtaatgtgccatttgatatctcaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT