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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAGATGATAAGGGGGCTCACTCAGGTATCTTGGGAGCGTGTGGATGTTAGCTTTCAGAAAAGTAAACAACGATACGTTGCTCACAGTACAATTCAGgtaacacattattattattgaaagaagaaacattaaatccaaatatacatgcttacttaaactttttgaaattatcatgtcttaaacatttttctcatttaaacaataaacatatacaaaaatacaaaaaacttaatagcataaaactaaagcaaaatatagtatgagtctttactattagttgaaag

Basic information

species Glycine max
transcript GLYMA04G20400.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G20400.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv11s0052g01660.t01 (Vitis vinifera), 5'ss of exon 9
AGGAGATGATAAGGGGGCTCACTCAGGTATCTTGGGAGCGTGTGGATGTTAGCTTTCAGAAAAGTAAACAACGATACGTTGCTCACAGTACAATTCAGgtaacacattattattattgaaagaagaaacattaaatccaaatatacatgcttacttaaactttttgaaattatcatgtcttaaacatttt-tctcatttaaacaataaacatatacaaaaatacaaaaaacttaatagcataaaactaaagcaaaatatagtatgagtctttactattagttgaaag
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AGGAAATGATTCAAGGCCTTACCCAAGTACCTTGGGAACGTGTGGATGTTAGCTTTCACAAAAGTAGGCAACGATATGTTGCACATAATACCATTCAGgcaa---gttctt-ttactggatggctttgc-ttgagtttgtaca-atttatttttttgcctataatcaacttatgatgt--taaatattccatgtggttttggtgct---------------------------------------------------------------------------------