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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATCTTCTTACAGAAAGCATGCAAGCCATGGATCAGAAGGATGCTTCTGGAAACAAACTACTTCAAGATGTTGGTTTATGGATATCTCATAAGATCAAGgtattgttgtacatgagatggttcttaaaacataattcttcttttcctcagaaattttgtagtataattctacttgcatatttatacatcttgatgagga...

Basic information

species Glycine max
transcript GLYMA04G09180.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193437771|gb|FK399172.1|FK399172
EST:     GAAACAAACTACTTCAAGATGTTGGTTTATGGATATCTCATAAGATCAAG                         GATCACTTTGCAAGGAAGG
genomic: GAAACAAACTACTTCAAGATGTTGGTTTATGGATATCTCATAAGATCAAGgtattgttgt ... gctgtaatagGATCACTTTGCAAGGAAGG
EST: gi|207836632|gb|GD806629.1|GD806629
EST:     GAAACAAACTACTTCAAGATGTTGGTTTATGGATATCTCATAAGATCAAG                         GATCACTTTGCAAGGAAGGATTAAGTATTCCCCATCAATCTTAAATATATA
genomic: GAAACAAACTACTTCAAGATGTTGGTTTATGGATATCTCATAAGATCAAGgtattgttgt ... gctgtaatagGATCACTTTGCAAGGAAGGAT-AAG-ATTCCC-ATCAATCTTAAATATATA
EST: gi|193309643|gb|FK276717.1|FK276717
EST:     GAAACAAACTACTTCAAGATGTTGGTTTATGGATATCTCATAAGATCAAG                         GATCACTTTGCAAGGAAGGATAAGATTCCCATCAATCTTAAATATATAG
genomic: GAAACAAACTACTTCAAGATGTTGGTTTATGGATATCTCATAAGATCAAGgtattgttgt ... gctgtaatagGATCACTTTGCAAGGAAGGATAAGATTCCCATCAATCTTAAATATATAG
EST: gi|193403000|gb|FK366496.1|FK366496
EST:     AAACAAACTACTTCAAGATGTTGGTTTTATGGATATCTCATAAGATCAAG                         GATCACTTTGCAAGGAAGGATAAGATTCCCATCAATCTTAAATATATAG
genomic: AAACAAACTACTTCAAGATGTTGG-TTTATGGATATCTCATAAGATCAAGgtattgttgt ... gctgtaatagGATCACTTTGCAAGGAAGGATAAGATTCCCATCAATCTTAAATATATAG
EST: gi|193580558|gb|FK538215.1|FK538215
EST:     GAAACAAACTACTTCAAGATGTTGGTTTATGGATATCTCATAAGATCAAG                         GATCACTTTGCAAGGAAGGAT
genomic: GAAACAAACTACTTCAAGATGTTGGTTTATGGATATCTCATAAGATCAAGgtattgttgt ... gctgtaatagGATCACTTTGCAAGGAAGGAT
EST: gi|193363314|gb|FK328350.1|FK328350
EST:     GAAACAAACTACTTCAAGATGTTGGTTTATGGATATCTCATAAGATCAAG                         GATCACTTTGCAAGGAAGGATAAGATTCCCATCAATCTTAAATATATAG
genomic: GAAACAAACTACTTCAAGATGTTGGTTTATGGATATCTCATAAGATCAAGgtattgttgt ... gctgtaatagGATCACTTTGCAAGGAAGGATAAGATTCCCATCAATCTTAAATATATAG
EST: gi|208202223|gb|GD994794.1|GD994794
EST:     GAAACAAACTACTTCAAGATGTTGGTTTATGGATATCTCATAAGATCAAG                         GATCACTTTGCAAGGAAGGATAAGATTCCCATCAATCTTAAATATATAG
genomic: GAAACAAACTACTTCAAGATGTTGGTTTATGGATATCTCATAAGATCAAGgtattgttgt ... gctgtaatagGATCACTTTGCAAGGAAGGATAAGATTCCCATCAATCTTAAATATATAG
EST: gi|208318731|gb|GE111170.1|GE111170
EST:     GAAACAAACTACTTCAAGATGTTGGTTTATGGATATCTCATAAGATCAAG                         GATCACTTTGCAAGGAAGGATAAGATTCCCATCAATCTTAAATATATAG
genomic: GAAACAAACTACTTCAAGATGTTGGTTTATGGATATCTCATAAGATCAAGgtattgttgt ... gctgtaatagGATCACTTTGCAAGGAAGGATAAGATTCCCATCAATCTTAAATATATAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGATCTTCTTACAGAAAGCATGCAAGCCATGGATCAGAAGGATGCTTCTGGAAACAAACTACTTCAAGATGTTGGTTTATGGATATCTCATAAGATCAAGgtattgttgtacatgagatggttcttaaaacataattcttcttttcctcagaaattttgtagtataattctacttgcatatttatacatcttgatgagga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA