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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGAGGAAAACAGCCCCAGTATTTCAAGAGTGCATTTGTAGGATACACTGTTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAGgtaactgatctgtttcatcttttttttttcttgttagggatggtgtggggttgtggaactatcattgatttttggtgatcaatctactctattatttttcacacttctaattgtatttcttttgccag

Basic information

species Glycine max
transcript GLYMA04G08510.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G08510.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G03120.1 (Arabidopsis thaliana), 5'ss of exon 9
TAGAGGAAAACAGCCCCAGTATTTCAAGAGTGCATTTGTAGGATACACTGTTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAGgtaactgatctgtttcatcttttttttttcttgttagggatggtgtggggttgtggaactatcattgat---ttttggtgatcaatctactctattatttttcacacttctaattgtatttcttttgccag
 ||| | | ||| || || || ||||  ||||||||| | |||||| |||||||  || |||| || ||||| || |||||||||||||| || |||||||| | |  | ||| || |  || || |    | ||          |    ||| |||  | ||  ||||   |||| ||  |   | | |  |    | |||||                           
AAGACGTAGACAACCACAATACTTCACAAGTGCATTTATCGGATACGCTGTTGGTGTGATCCTCACGATTGTAGTCATGAACTGGTTTCAAGCAGCACAGgtcagtt-tttgtgtcttaattgttgtcatctatttattgcaaccttattttg-ggatttctctctgataggtttttgtttttgttttgcctt----tgtttcag--------------------------

upper sequence: GLYMA04G08510.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv06s0009g03520.t01 (Vitis vinifera), 5'ss of exon 10
TAGAGGAAAACAGCCCCAGTATTTCAAGAGTGCATTTGTAGGATACACTGTTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAGgtaactgatctgtttcatcttttttttttct-tgttagggatg-gtgtggggttgtggaactatc-attgatttttggtgatcaatctact--ctattatttttca----cacttctaatt---gtatttcttt-tgccag-------------------------------------------------------
 ||||| |||  |  |||||| || |||||||||||| | ||||| ||    || |||||  | ||||||||||| |||||||||||||| ||||||||||| |||  |          ||| | | | || | | |  |||  |||||| | | | |  |  |   |||| |||   | |  |     ||  || | | | || |    || |   | ||   |||||||  | ||  ||                                                       
CAGAGGGAAAGGGAACCAGTACTTTAAGAGTGCATTTTTGGGATATACAACCGGTTTGGTTGTAACAATTGTTGTCATGAACTGGTTTCAAGCTGCACAGgtgactactacaaaatccatttctctatcctatatgactgatacgtgtggagatatagttccctttgttgaatttcattcagtatctagctggctttaactgtttaagaccagtggaagttagagtatttccatgtgtgagttttctcgtgttattcactacttggtcctaactgttattctaacttcactttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193659073|gb|FK603388.1|FK603388
EST:     TACAATTGTTGTGATGAACTGGTTTCAGGCTGACAACAAG                         CCTGCTCTTTTGTATATTGTACCTTCTGTAATTGGATTTTTGGCTGCTCA
genomic: TACAATTGTTGTGATGAACTGGTTTCAGGCTG-C-AC-AGgtaactgatc ... cttttgccagCCTGCTCTTTTGTATATTGTACCTTCTGTAATTGGATTTTTGGCTGCTCA
EST: gi|6915891|gb|AW397421.1|AW397421
EST:     TTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAG                         CCTGCTCTTTTGTATATTGTACCTTCTGTAATTGGATTTTTGGCTGCTCAT
genomic: TTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAGgtaactgatc ... cttttgccagCCTGCTCTTTTGTATATTGTACCTTCTGTAATTGGATTTTTGGCTGCTCAT
EST: gi|193580827|gb|FK534060.1|FK534060
EST:     TGTGATGAACTGGTTTCAGGCTGCACAG                         CCTGCTCTTTTGTATATTGTACCTTCTGTAATTGGATTTT-GGCTGCTCAT
genomic: TGTGATGAACTGGTTTCAGGCTGCACAGgtaactgatc ... cttttgccagCCTGCTCTTTTGTATATTGTACCTTCTGTAATTGGATTTTTGGCTGCTCAT
EST: gi|120494250|gb|EH222417.1|EH222417
EST:     TTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAG                         CCTGCTCTTTTGTATATTGTACCTTCTGTAATTGGATTTTTGGCTGCTCAT
genomic: TTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAGgtaactgatc ... cttttgccagCCTGCTCTTTTGTATATTGTACCTTCTGTAATTGGATTTTTGGCTGCTCAT
EST: gi|192327708|gb|FK020699.1|FK020699
EST:     TTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAG                         CCTGCTCTTTTGTATATTGTACCTTCTGTAATTGGATTTTTGGCTGCTCAT
genomic: TTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAGgtaactgatc ... cttttgccagCCTGCTCTTTTGTATATTGTACCTTCTGTAATTGGATTTTTGGCTGCTCAT
EST: gi|14011195|gb|BG726048.1|BG726048
EST:     GTTGTGATGAACTGGTTTCAGGCTGCACAG                         CCTGCTCTTTTGTATATTGTACCTTCTGTAATTGGATTTTTGGCTGCTCAT
genomic: GTTGTGATGAACTGGTTTCAGGCTGCACAGgtaactgatc ... cttttgccagCCTGCTCTTTTGTATATTGTACCTTCTGTAATTGGATTTTTGGCTGCTCAT