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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGGGGATATTTTGCTTACATGGCAATTGATAGTCTCCCAGGGAATCAGTTCTGGGAAAGGATATTGCTTCTCTTCGTCACCTCAAGCCGGCGTTACAAgtaagtacagccttatgtaaattagtttcaatgcataatggttttgaagtcgagagattattcacggctttcaaatttacattttcatctaggatgcagaattcaattaacattttcactaggcattttaatatactataagaagctaattacatattttgtcatggttcttgtctgtttgggcag

Basic information

species Glycine max
transcript GLYMA04G07390.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G07390.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G074079_T01 (Zea mays), 5'ss of exon 5
TATGGGGATATTTTGCTTACATGGCAATTGATAGTCTCCCAGGGAATCAGTTCTGGGAAAGGATATTGCTTCTCTTCGTCACCTCAAGCCGGCGTTACAAgtaag--tacagccttatgtaaattagtttcaa-tgcataatggttttgaagtcgagagattattcacggctttcaaatttacattttcatctaggatgcagaattcaattaacattttcactaggcattttaatatactataagaagctaattacatattttgtcatggttcttgtctgtttgggcag
|   ||| || ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||||   ||||| ||| | ||   ||| || || |||||||||     | | | | |   ||||   ||||| || |  || |   |      |  | |  || ||  || |     | | | ||| || |||     | ||  | |        || ||                                                                    
TCCAGGGTTACTTTGCCTACATGGCCATTGACAGTCTACCAGGGAATCAGTTCTGGGAGAGGATACAACTTCTGTTCATTACAGAAAGACGACGCTACAAgtaacatctctgtcctgtagcaattcacttcaactgaacgattgggctagcacgggcacaa-atgcagagcctgtgtttcttc-tttgcaactaatcatccga--ttatgccgtggttgcag-------------------------------------------------------------------

upper sequence: GLYMA04G07390.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G051753_T02 (Zea mays), 5'ss of exon 11
TATGGGGATATTTTGCTTACATGGCAATTGATAGTCTCCCAGGGAATCAGTTCTGGGAAAGGATATTGCTTCTCTTCGTCACCTCAAGCCGGCGTTACAAgtaag--tacagccttatgtaaattagtttcaatgcataatggttttgaagtcgagagattattcacggctttcaaatttacattt-tcatctaggatgcagaattcaattaacattttcactaggcattttaatatactataagaagctaattacatattttgtcatggttcttgtctgtttgggcag
| ||||| || ||||| |||||||| || || ||||| |||||||||||||||||||| ||||||  |||||| ||| | ||   |||||| || |||||||||     | | |       ||||   |||||     || | ||  |    |  | |      |||   |    |   |   ||| |  | |  ||   |  || | |||| |    |   |                                                                  
TCTGGGGTTACTTTGCCTACATGGCCATCGACAGTCTACCAGGGAATCAGTTCTGGGAGAGGATACAGCTTCTGTTCATTACAGAAAGCCGACGCTACAAgtaacatctctgtcccgcagcaattcacttcaaaatg-aaggattgggctagcacggg------cacaaatgcagagcctgtgtttcttctttgcgactaatcatccgatta-cgccgtggttgcag--------------------------------------------------------------

upper sequence: GLYMA04G07390.1 (Glycine max), 5'ss of exon 10
lower sequence: AT4G32510.1 (Arabidopsis thaliana), 5'ss of exon 10
TATGGGGATATTTTGCTTACATGGCAATTGATAGTCTCCCAGGGAATCAGTTCTGGGAAAGGATATTGCTTCTCTTCGTCACCTCAAGCCGGCGTTACAAgtaagtacagccttatgtaaattagtttcaatgcataatggttttgaagtcgagagattattcacggctttcaaatttacattttcatctaggatgcagaattcaattaacattttcactaggcattttaatatactataagaagctaattacatattttgtcatggttcttgtctgtttgggcag
||||||| || ||  ||||||||||  ||||||||||||| |||||||| |||||||||||  |   | | || ||| ||||  |  | || || | ||||||  |  | |  | |    ||   |  |||    |  |    |    ||  | | | | |        ||    |||   |||   | |  ||  |||                                                                                       
TATGGGGTTACTTCACTTACATGGCTGTTGATAGTCTCCCTGGGAATCAATTCTGGGAAAGACTTCAGTTACTATTCATCACTCCTGGACGTCGATTCAAgtac-tgaaactctcttcttatacatcccaacctcttttaacat----gtttataaactttctgatatgttttgctttgt-tttgtgtgtgtga-acag---------------------------------------------------------------------------------------

upper sequence: GLYMA04G07390.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv04s0008g04980.t01 (Vitis vinifera), 5'ss of exon 10
TATGGGGATATTTTGCTTACATGGCAATTGATAGTCTCCCAGGGAATCAGTTCTGGGAAAGGATATTGCTTCTCTTCGTCACCTCAAGCCGGCGTTACAAgtaagtacagccttatgtaaattagtttcaatgcataatggttttgaagtcgagagattattcacggctttcaaatttacattttcatctaggatgcagaattcaattaacattttcactaggcattttaatatactataagaagctaattacatattttgtcatggttcttgtctgtttgggcag
| |||||||| ||||| ||||||||  ||||||| ||||| ||||||||||||||||||||||| ||||| |||||  ||||| |  |||| ||||||||||||||        | | ||     |  | ||  |   |  ||| |  || | |     | | |    |    ||     |        |||    |  | || | |||  ||| | | ||   ||      ||   ||   |   |  |||||                                
TTTGGGGATACTTTGCCTACATGGCCGTTGATAGCCTCCCTGGGAATCAGTTCTGGGAAAGGATCTTGCTGCTCTTTATCACCCCTGGCCGCCGTTACAAgtaagt-------cacgcaataggatcgcgattta-gctaatttcgccgtgggg----cagtgataaatacagaaccagaaaaaatgaatagatgactaattttatttattattgtta-tactgatccc---atgtcatgcaatatttgttacag-------------------------------

upper sequence: GLYMA04G07390.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S38_161V6.1 (Physcomitrella patens), 5'ss of exon 10
TATGGGGATATTTTGCTTACATGGCAATTGATAGTCTCCCAGGGAATCAGTTCTGGGAAAGGATATTGCTTCTCTTCGTCACCTCAAGCCGGCGTTACAAgtaagtacagccttatgtaaattagtttcaatgcataatggttttgaagtcgagagattattcacggctttcaaatttacattttcatctaggatgcagaattcaattaacattttcactaggcatt-ttaatatactataagaagctaattacatattttgtcatggttcttgtctgtttgggcag
| ||||| || |||||||||||||| ||||| ||||| ||||| || |||||||||| ||| || |  || ||||||  | ||||      ||| || ||||||||    |   |  | ||  ||||  ||   |||      |  || |  ||   | ||     |  ||      |   | |   |||     |      ||  | |  || | |   |  | || || || |  ||                                                
TGTGGGGCTACTTTGCTTACATGGCCATTGAAAGTCTTCCAGGAAACCAGTTCTGGGGAAGAATTTGTCTACTCTTCAGCTCCTCCGCTAAGCGGTATAAgtaagtgattcaacagatgaa--agttaaaagtgatagacaaataaaattaaagtattaatatgatgtgttgggtagtgtctctagctctgatgggtccgcctctgtgatgatgtcctgaatacgttgttgatgtgttactcag-------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8402437|gb|BE058071.1|BE058071
EST:     TTCTGGGAAAGGATATTGCTTCTCTTCGTCACCTCAAGCCGGCGTTACAA                         AATTTTGGAAGGTTCTCATGCCTCTTTTGTGGAGACAGTACCATTCAAGAC
genomic: TTCTGGGAAAGGATATTGCTTCTCTTCGTCACCTCAAGCCGGCGTTACAAgtaagtacag ... gtttgggcagAATTTTGGAAGGTTCTCATGCCTCTTTTGTGGAGACAGTACCATTCAAGAC