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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAATACGAAGGTAGGACAATTGTGAATTCATCATCATCAACTGATGCTTTTAATCAATTAACGACATCTGATGACCAAATGGACATCCTACTAGCAGAGgtacaaattatatctttctgtgtctttctattttcttttcagttgtagagttgagttgtagctactttttttaatgcaacacatttagagaatccagcgaaccttcctattcattttaagataaagagtttatttaaatttgaccag

Basic information

species Glycine max
transcript GLYMA04G06980.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192300313|gb|FG987860.1|FG987860
EST:     TTAATCAATTAACGACATCTGATGACCAAATGGACATCCTACTAGCAGAG                         GTAGAAAACTTAGAGAAGGACTACGGAAGTGCAGCTTGCAATGTAGATAAA
genomic: TTAATCAATTAACGACATCTGATGACCAAATGGACATCCTACTAGCAGAGgtacaaatta ... atttgaccagGTAGAAAACTTAGAGAAGGACTACGGAAGTGCAGCTTGCAATGTAGATAAA
EST: gi|11274322|gb|BF324690.1|BF324690
EST:     TTAATCAATTAACGACATCTGATGACCAAATGGACATCCTACTAGCAGAG                         GTAGAAAACTTAGAGAAGGACTACGGAAGTGCAGCTTGCAATGTAGATAAA
genomic: TTAATCAATTAACGACATCTGATGACCAAATGGACATCCTACTAGCAGAGgtacaaatta ... atttgaccagGTAGAAAACTTAGAGAAGGACTACGGAAGTGCAGCTTGCAATGTAGATAAA
EST: gi|151402539|gb|EV272352.1|EV272352
EST:     TTAATCAATTAACGACATCTGATGACCAAATGGACATCCTACTAGCAGAG                         GTAGAAAACTTAGAGAAGGACTACGGAAGTGCAGCTTGCAATGTAGATAAA
genomic: TTAATCAATTAACGACATCTGATGACCAAATGGACATCCTACTAGCAGAGgtacaaatta ... atttgaccagGTAGAAAACTTAGAGAAGGACTACGGAAGTGCAGCTTGCAATGTAGATAAA
EST: gi|22933881|gb|BU551020.1|BU551020
EST:     TTAATCAATTAACGACATCTGATGACCAAATGGACATCCTACTAGCAGAG                         GTAGAAAACTTAGAGAAGGACTACGGAAGTGCAGCTTGCAATGTAGATAAA
genomic: TTAATCAATTAACGACATCTGATGACCAAATGGACATCCTACTAGCAGAGgtacaaatta ... atttgaccagGTAGAAAACTTAGAGAAGGACTACGGAAGTGCAGCTTGCAATGTAGATAAA