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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGTCACCAACTGATCCAATCCTTTCACTTTTTGTTCCTGATTTGTGTGGTGAAAACCAACCTGCTAGTgtaagtgcattttattaatttatgcaatgttggagcactgttttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattgcag

Basic information

species Glycine max
transcript GLYMA04G06290.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G06290.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os10g41960.1 (Oryza sativa), 5'ss of exon 8
------------------------------CTGGTCACCAACTGATCCAATCCTTTCACTTTTTGTTCCTGATTTGTGTGGTGAAAACCAACCTGCTAGTgtaagtgcattttattaatttatgcaatgttggagcactgttttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattgcag
                              |||||| ||||||||||||||| |  | |||||||| ||||| ||| |||| | |||||| ||||| || ||||||||| |||  |    |        || ||| |  |||   |  |   ||   |  | |   | || |||| || | |||  | |                                                
TCTGAAGGTTGAGAATGTTGTCGACTTCTGCTGGTCTCCAACTGATCCAATCATAGCCCTTTTTGTCCCTGAGTTGGGTGGAGGAAACCAGCCTGCAAGGgtaagtgcaattttctgtgcttcatcccttttgaggaa-gttccgtcaactaatg-gtgaagactaaaatctata-atttttattgaaag-----------------------------------------------