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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAGATGTTCTTGGTCAGTTCATGCCTTTGGTTGGTATTGACTGGTCACAGACAGGTGTTGCACATTTATTCTCCGCTATCAAGgtttgcttatcttgtccttgttttagatgttttgagactgctacaatatgataatgtggttaaatcctctgaatacactgatcatacatcattgcatatg...

Basic information

species Glycine max
transcript GLYMA04G04060.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G04060.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os11g40080.1 (Oryza sativa), 5'ss of exon 4
GTCAGATGTTCTTGGTCAGTTCATGCCTTTGGTTGGTATTGACTGGTCACAGACAGGTGTTGCACATTTATTCTCCGCTATCAAGgtttgcttat--cttgtcc-ttgttttagatg----ttttgagactgctacaatatgata--atgtggttaaatcctctgaat-acactgatcatacatcattgcatatg--------------------------------------------------------------------------------
||| ||||||||||| |||||||||||  |||||||| |||| ||||| || |  ||||||||||||||||| || || || ||||| ||| |    ||  | |    |||||  |     ||       |   ||||     ||  |  ||  | | |  |  |  | | ||||    |   |  |||  | |                                                                                 
GTCTGATGTTCTTGGCCAGTTCATGCCGCTGGTTGGTGTTGATTGGTCTCAAAATGGTGTTGCACATTTATTTTCTGCAATAAAGgtatgcatgctactcatgcaccattttaagttccacttccttatgtagcacaaaccagtaggaattgactgattattgcgttttatactgtgtgtgtgtgtttgtctctatctatgtgaattcatgcaccaatctggtcctaaaatgtttattgacttgagcttgttcttgttgccttccatttctgcag

upper sequence: GLYMA04G04060.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G42870.2 (Arabidopsis thaliana), 5'ss of exon 5
GTCAGATGTTCTTGGTCAGTTCATGCCTTTGGTTGGTATTGACTGGTCACAGACAGGTGTTGCACATTTATTCTCCGCTATCAAGgtttgcttatcttgtccttgttttagatgttttgagactgctacaatatgataatgtggttaaatcctctgaatacactg--atcatacatcattgcatatg-----------
 || |||||  | || ||||| ||||||||||||||||| || |||||||| ||||||||| ||||||| || || ||| | ||||| || |     ||   |  || |   |  || |  |    ||  | |||||| |    | ||| |  ||  | | |  |  |  || |||  |  |   |            
ATCGGATGTATTAGGCCAGTTTATGCCTTTGGTTGGTATAGATTGGTCACAAACAGGTGTTACACATTTGTTTTCGGCTGTAAAGgtctgttatctgtgctttacttgttcgtaattcgt-atcattatga-atgatactagcatcaaaacaacttgacaaaaagcaaagattcattttctcccttacatttgtacag

upper sequence: GLYMA04G04060.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv18s0001g10680.t01 (Vitis vinifera), 5'ss of exon 7
GTCAGATGTTCTTGGTCAGTTCATGCCTTTGGTTGGTATTGACTGGTCACAGACAGGTGTTGCACATTTATTCTCCGCTATCAAGgtttgct-tatcttgtcct-tgttttagatgttttgagactgctacaat-atgataatgtggttaaatcctctgaatacactgatcatacatcattgcatatg
|||||||||||| || |||||||||||| |||||||  | || ||||||||||||||||| |||||| |||| || ||||| |||||||| | | | |  || | |||| |     ||  || | |  |  ||| ||| | ||    ||||          || | ||  || |  || ||   ||  
GTCAGATGTTCTAGGGCAGTTCATGCCTATGGTTGGAGTAGATTGGTCACAGACAGGTGTAGCACATCTATTTTCTGCTATTAAGgtttgttgtgtttcctcatatgttcttataattaggaaaattttcaaatcatgtttat-cacttaaggaagtattttatattg--caaatttccttctttagt