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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGATTCTCATTAGAGATATCCCTAATGCAAAGGAAGCTGGGTTGCTTCATCTTTGTGAGTTCATAGAAGATTGTGAGTTCACTTATTTGTCCACACAGgtattacttccgacttgtgcttgtgcttcattattcactgtttgtgcatttcttttgtctggaattctacatcttggttgttaacgattttgttccccttgtactgtag

Basic information

species Glycine max
transcript GLYMA04G01470.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G01470.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os07g10150.1 (Oryza sativa), 5'ss of exon 10
TGTGATTCTCATTAGAGATATCCCTAATGCAAAGGAAGCTGGGTTGCTTCATCTTTGTGAGTTCATAGAAGATTGTGAGTTCACTTATTTGTCCACACAGgtattacttccgacttgtgcttgtgcttcattattcactgtttgtgcatttcttttgtctggaattctaca--tcttggttgttaacgattttgttccccttgtactgtag
| | || |||||||||||||| ||| ||||||| |||  ||| ||  ||||  | ||||| ||||| ||||||||||||||||||||| |||| || |||||| |    || |  | |  || |       | |    ||   || || |  || | || | | ||       | |   ||  |  |||   |||    ||||        
TATCATACTCATTAGAGATATTCCTGATGCAAAAGAAAGTGGTTTATTTCACTTGTGTGAATTCATTGAAGATTGTGAGTTCACTTATATGTCTACTCAGgtaatgg--ccaatctatcattttataaatgtgtattttgcaagt-cactagttatttccgaacttaggaggttgtaacttaattgcgacaatgtcatgcttg--------

upper sequence: GLYMA04G01470.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G036034_T01 (Zea mays), 5'ss of exon 10
TGTGATTCTCATTAGAGATATCCCTAATGCAAAGGAAGCTGGGTTGCTTCATCTTTGTGAGTTCATAGAAGATTGTGAGTTCACTTATTTGTCCACACAGgta-ttacttccgacttgtgcttgtgcttcattattcactgtttgtgcatttcttttgtctggaattctacatcttggttgttaacgattttgttccccttgtactgtag
| | || |||||||||||||| ||| |||||||||||   || ||  ||||  | || || ||||||||||||||||| ||||| ||||||||||| |||||| | | ||     || |||  |    | ||| |  |   |   || |     |   | |     |||   | || ||  | || | | || || |  ||||       
TATTATACTCATTAGAGATATTCCTGATGCAAAGGAAAGCGGTTTATTTCACTTATGCGAATTCATAGAAGATTGTGAATTCACCTATTTGTCCACTCAGgtaatcaattaatcattctgcaagcatgtaatt-tggaaaatacctgtaagatatcaatttaattatctttttttttgtc-taaatggtatt-tttcttttgt-------

upper sequence: GLYMA04G01470.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G178618_T01 (Zea mays), 5'ss of exon 10
TGTGATTCTCATTAGAGATATCCCTAATGCAAAGGAAGCTGGGTTGCTTCATCTTTGTGAGTTCATAGAAGATTGTGAGTTCACTTATTTGTCCACACAGgtatt--acttccgactt---gtgcttgtgcttcattattcactgtttgtgcatttcttttgtctggaattctacatcttggttgttaacgattttgttccccttgtactgtag
| | || |||||||||||||| ||| |||| ||||||   || ||  ||||  | || || ||||||||||| ||||| ||||| ||||||||||| |||||| |  |||    | |      || |||  ||    | ||  |  |     | |  |||  | |   ||| |   |||   |  ||     ||||||| |             
TATTATACTCATTAGAGATATTCCTGATGCGAAGGAAAGCGGTTTATTTCACTTATGCGAATTCATAGAAGACTGTGAATTCACCTATTTGTCCACTCAGgtaatcaactaatcattctgcaggcatgtaatttggaaatccgttgtaagatactgatttaatttc--attttttgtctaaatgtttttttcttttgtttct------------

upper sequence: GLYMA04G01470.1 (Glycine max), 5'ss of exon 10
lower sequence: AT4G34450.1 (Arabidopsis thaliana), 5'ss of exon 9
TGTGATTCTCATTAGAGATATCCCTAATGCAAAGGAAGCTGGGTTGCTTCATCTTTGTGAGTTCATAGAAGATTGTGAGTTCACTTATTTGTCCACACAGgtattacttccgacttgtgcttgtgcttcattattcactgtttgtgcatttcttttgtctggaattctacatcttggttgttaacgattttgttccccttgtactgtag
|||||   | || |||||||| ||  |||||||||||  |||  |||||||||| ||||| ||||| ||||||||||| ||||| ||| | || ||||||||| |  ||||  | |     || | ||   |||| |    || ||  ||  |    | |  | |    ||                                      
TGTGACCATTATCAGAGATATTCCGGATGCAAAGGAAAGTGGACTGCTTCATCTATGTGAATTCATTGAAGATTGTGAATTCACATATCTTTCAACACAGgtaattattccatcatccatctggggtt-gctattaaaaacttatgtgttattgaaatgtttattctcgcacag-----------------------------------

upper sequence: GLYMA04G01470.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv03s0063g02450.t01 (Vitis vinifera), 5'ss of exon 10
TGTGATTCTCATTAGAGATATCCCTAATGCAAAGGAAGCTGGGTTGCTTCATCTTTGTGAGTTCATAGAAGATTGTGAGTTCACTTATTTGTCCACACAGgtattacttccgacttgtgcttgtgcttcattattcactgtttgtgcatttcttttgtctggaattctacatcttggttgttaacgattttgttccccttgtactgtag
 ||||| ||||| |||||||| ||| ||||||| |||   |||||||||||||| ||||| || || ||||||||||||||||| ||| | || |||||||||  | ||      |    ||    |   | |||||  | |  ||   ||  |||   |      ||| |  | |  |  |  | ||||| || || |  | | |   
CGTGATCCTCATAAGAGATATTCCTGATGCAAAAGAAAGCGGGTTGCTTCATCTGTGTGAATTTATTGAAGATTGTGAGTTCACCTATCTTTCAACACAGgtagcatttt---tctccatttaatatctttaattcaa-gctcatggtgtttatttacttctttgactatagatagtctact--caattttatttccttaattcag---