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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATTTGTGGATCAATATTGCGAAAAGGAACAATTCAGTTTTATTGACTACATATCTAGTGGTTTTGAACTGAACTTCATGGTTGCTGTAGATTTCACTGgtaagtaacaattgttcttctattagcaacggtgattatgaatttcatctttcttgtttgttaacctcttcaaaaaatttccag

Basic information

species Glycine max
transcript GLYMA03G40210.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40210.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os05g30970.1 (Oryza sativa), 5'ss of exon 10
CTATTTGTGGATCAATATTGCGAAAAGGAACAATTCAGTTTTATTGACTACATATCTAGTGGTTTTGAACTGAACTTCATGGTTGCTGTAGATTTCACTGgtaagtaacaattgttcttctattagcaacggtgattatgaatttcatct-ttcttgtttgttaacctcttcaaaaaatttccag
 | ||||||||| | |     ||||| |  |||   | |||  | |||||||| || ||||||||||| || || || ||||| |||||||||||||| ||| ||   ||  ||||      | |  |      | | | ||| |||| | |  ||         |  |         ||| |||
TTGTTTGTGGATAAGTTCCAGGAAAAAGTTCAACATACTTTCTTGGACTACATTTCCAGTGGTTTTGAGCTAAATTTTATGGTGGCTGTAGATTTCACGGgttagcgcca--tgtttcagcttaaatatatagcactgtcaatctcatatatatttacaaaagtgcaaccctggtgtgttttcag

upper sequence: GLYMA03G40210.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G08860.1 (Arabidopsis thaliana), 5'ss of exon 10
CTATTTGTGGATCAATATTGCGAAAAGGAACAATTCAGTTTTATTGACTACATATCTAGTGGTTTTGAACTGAACTTCATGGTTGCTGTAGATTTCACTGgtaagtaacaattgttcttctattagcaacggtgattatgaatttcatctttcttgtttgttaacctcttcaaaaaat-ttccag
||  |||||||||  |||   || || |  || | ||||||| |||| |||||||| ||||| |||||||| || ||||||||||| || || ||||||||| | | ||  || |||| ||      |    | ||  | | ||  |     |||| |  ||||  |          | || |||
CTCATTGTGGATCGTTATGTGGAGAAAGTCCAGTACAGTTTTCTTGATTACATATCCAGTGGCTTTGAACTTAATTTCATGGTTGCAGTTGACTTCACTGgtgattcacc-ttcttctacttcatatatatcttatctttacttagaaac--cttgatcattaagattgatggtctgtctttcag

upper sequence: GLYMA03G40210.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv14s0030g00550.t01 (Vitis vinifera), 5'ss of exon 7
CTATTTGTGGATCAATATTGCGAAAAGGAACAATTCAGTTTTATTGACTACATATCTAGTGGTTTTGAACTGAACTTCATGGTTGCTGTAGATTTCACTGgtaagtaacaattgttcttctattagcaacggtgattatgaatttcat--ctttcttgtttgttaacc--tcttcaaaaaatttccag
|||||||| ||||||| ||| || ||| | | || |||||||||||| ||  | |||||||| |||||| | || || ||||||||||| ||||| |||||||| ||    |     ||  |  |          ||     ||| ||   |||  |||||  | | |   | |   |   | |||||
CTATTTGTTGATCAATTTTGTGAGAAGCAGCTATACAGTTTTATTGATTATGTTTCTAGTGGATTTGAATTTAATTTTATGGTTGCTGTTGATTTTACTGgtaaatactcttcagctttgcaggattgctatctttttgcgtttttataatttttctgtttcatgagcggccattttattttgtccag

upper sequence: GLYMA03G40210.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv14s0030g00540.t01 (Vitis vinifera), 5'ss of exon 8
CTATTTGTGGATCAATATTGCGAAAAGGAACAATTCAGTTTTATTGACTACATATCTAGTGGTTTTGAACTGAACTTCATGGTTGCTGTAGATTTCACTGgtaagtaacaattgttcttctattagcaacggtgattatgaatttc----atctttcttgtttgttaacctcttcaaaaaatt-tccag
|||||||| ||||||| ||| || |||   | || |||||||||||| ||  | |||||||| |||||||| || || ||||||||||| ||||| || ||||| ||    |     ||  |       |  |  || ||  |||     || |||||  ||  | | |  ||     |  || |||||
CTATTTGTTGATCAATTTTGTGAGAAGCCTCTATACAGTTTTATTGATTATGTTTCTAGTGGATTTGAACTTAATTTTATGGTTGCTGTCGATTTTACCGgtaaatactcttcagctttgcag-gattgctatctttttgcgtttttataatttttctgtttcatgagcagctgttttattttgtccag

upper sequence: GLYMA03G40210.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv14s0030g00570.t01 (Vitis vinifera), 5'ss of exon 11
CTATTTGTGGATCAATATTGCGAAAAGGAACAATTCAGTTTTATTGACTACATATCTAGTGGTTTTGAACTGAACTTCATGGTTGCTGTAGATTTCACTGgtaagtaacaattgttcttctatta--gcaacggtgattatgaatttcatctttcttgtttgttaacc--tcttcaaaaaatttccag
|||||||| ||||||| ||| || ||| | | || |||||||||||| ||  | |||||||| |||||| | || || ||||||||||| ||||| |||||||| ||    |     ||  |  |  || |   |  |  |   ||  |  |||  |||||  | | |   | |   |   | |||||
CTATTTGTTGATCAATTTTGTGAGAAGCAGCTATACAGTTTTATTGATTATGTTTCTAGTGGATTTGAATTTAATTTTATGGTTGCTGTTGATTTTACTGgtaaatactcttcagctttgcaggattgctatctttttgcttttttgtaatttttctgtttcatgagcggccattttattttgtccag

upper sequence: GLYMA03G40210.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv14s0030g00500.t01 (Vitis vinifera), 5'ss of exon 10
CTATTTGTGGATCAATATTGCGAAAAGGAACAATTCAGTTTTATTGACTACATATCTAGTGGTTTTGAACTGAACTTCATGGTTGCTGTAGATTTCACTGgtaagtaacaattgttcttctattagcaacggtgattatgaatttc----atctttcttgtttgttaacctcttcaaaaaatt-tccag
|||||||| ||||| | ||| || ||| | | |  |||||||||||| ||  | |||||||| |||||||| || || ||||||||||| ||||| || ||||| ||    |     ||  |       |  |  || ||  |||     || |||||  ||  | | |  ||     |  || |||||
CTATTTGTTGATCAGTTTTGTGAGAAGCAGCTACACAGTTTTATTGATTATGTTTCTAGTGGATTTGAACTTAATTTTATGGTTGCTGTCGATTTTACCGgtaaatactcttcagctttgcag-gattgctatctttttgcgtttttataatttttctgtttcatgagcagctgttttattttgtccag

upper sequence: GLYMA03G40210.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv12s0121g00080.t01 (Vitis vinifera), 5'ss of exon 10
CTATTTGTGGATCAATATTGCGAAAAGGAACAATTCAGTTTTATTGACTACATATCTAGTGGTTTTGAACTGAACTTCATGGTTGCTGTAGATTTCACTGgtaagtaacaattgttcttctattagcaacggtgattatgaatttcat--ctttcttgtttgttaacc--tcttcaaaaaatttccag
|||||||| ||||||| ||| || ||| | | || |||||||||||| ||  | |||||||| |||||| | || || ||||||||||| ||||| |||||||| ||    |     ||  |  |          ||     ||| ||   |||  |||||  | | |   | |   |   | |||||
CTATTTGTTGATCAATTTTGTGAGAAGCAGCTATACAGTTTTATTGATTATGTTTCTAGTGGATTTGAATTTAATTTTATGGTTGCTGTTGATTTTACTGgtaaatactcttcagctttgcaggattgctatctttttgcgtttttataatttttctgtttcatgagcggccgttttattttgtccag