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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATGGTGAAATTTCACTTTGGGAACTTGGGTTTCGAGACAGGTTGGTCTCAAAGCCATTCAAGATATGGGATATCTCAGCGTGTTCATTACCATTTCAGgtttttactttcattttcaacaagtttctaatttctatactgctctttctatagtacccttagttatggtctaaccagacaataagtgtattgttatggtggtcattggtgcttgagaattcaaaccctttggaattttatagtttctaatttttacag

Basic information

species Glycine max
transcript GLYMA03G39290.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G39290.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G27030.1 (Arabidopsis thaliana), 5'ss of exon 9
TAATGGTGAAATTTCACTTTGGGAACTTGGGTTTCGAGACAGGTTGGTCTCAAAGCCATTCAAGATATGGGATATCTCAGCGTGTTCATTACCATTTCAGgtttttactttcattttcaacaagtttctaatttctatactgctctttctatagtacccttagttatggtctaaccagacaataagtgtattgttatggtggtcattggtgcttgagaattcaaaccctttggaa---ttttatagtttctaatttttacag---------
 |  || |||||  || | ||||||||||    |||||| ||| |||| |||| ||||||||||||||||||||| ||    || |||   |  |||||||||| |  || ||  |  || |||||| || ||| | |   | |   | ||||        ||      |  ||||| |     | ||    ||  ||| | | |   ||    |  || | |    || || ||   | ||||| || |   | |||             
GACGGGAGAAATCACATTGTGGGAACTTGCCGCTCGAGAGAGGCTGGTTTCAAGGCCATTCAAGATATGGGATATGTCTAATTGCTCACATCAGTTTCAGgtttgtctttacagct--aagaagtttttagtttatgt---gtttgatgtataa-------aggcggaattcaaccaaatggcta-tgagaagtgttggagataaaacgtatcagcaaact-agttgctgtgcaagattcttatacttgcctttcttttggcatcattcag

upper sequence: GLYMA03G39290.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv14s0060g01680.t01 (Vitis vinifera), 5'ss of exon 9
TAATGGTGAAATTTCACTTTGGGAACTTGGGTTTCGAGACAGGTTGGTCTCAAAGCCATTCAAGATATGGGATATCTCAGCGTGTTCATTACCATTTCAGgtttttactttcattttcaacaagtttctaatttctatactgctctttctatagtacccttagttatggtctaaccagacaa-taagtgtattgttatggtggtcattggtgcttgagaattcaaaccctttggaattttatagtttctaatttttacag
||||||||| ||| ||||||||||| |||  || ||||| ||||||||  |||| | |||||||||||||||  |  |||| |||||||||||| |||||||| | || | ||| ||   | ||   |   ||| ||| |   |   | | |||||   ||| |   ||| || |    |   |   ||| || ||||     | |                                                      
TAATGGTGATATTACACTTTGGGAAGTTGCATTGCGAGAGAGGTTGGTTACAAAACAATTCAAGATATGGGACGTGACAGCTTGTTCATTACCAGTTCAGgttctcacat-catatttttctag---cagttttatattccatttgctttttagtaaaattattg--ggtttatcttctctgctttatgtgttattatatacttta------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254315405|gb|GR825214.1|GR825214
EST:     CAAAGCCATTCAAGATATGGGATATCTCAGCGTGTTCATTACCATTTCAG                         GCAGCTATGGGTCAAAGATT
genomic: CAAAGCCATTCAAGATATGGGATATCTCAGCGTGTTCATTACCATTTCAGgtttttactt ... atttttacagGCAGCTATGG-TCAAAGATT