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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATGGCGACCTCTACTTAAAACTTGCTAAGAAGGGTATAGAAAAAGGTGCAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaattcatcacattttcttgttaaatatcataaatgtatctgagactaatacgatcataagatcatttgaaaagtgcatatcatcatgtcagatttatt...

Basic information

species Glycine max
transcript GLYMA03G39130.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15662403|gb|BI699774.1|BI699774
EST:     CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG                         TCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
genomic: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaattcatc ... tatgatgcagTCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
EST: gi|6845919|gb|AW348209.1|AW348209
EST:     CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG                         TCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
genomic: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaattcatc ... tatgatgcagTCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
EST: gi|208248584|gb|GE047623.1|GE047623
EST:     CTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG                         TCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
genomic: CTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaattcatc ... tatgatgcagTCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
EST: gi|192297310|gb|FG992404.1|FG992404
EST:     CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG                         TCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
genomic: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaattcatc ... tatgatgcagTCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
EST: gi|193366228|gb|FK333645.1|FK333645
EST:     CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG                         TCAATCAGCCCAGACAAAAAGCAGATGA
genomic: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaattcatc ... tatgatgcagTCAATCAGCCCAG-CAAAA-GCAGATGA
EST: gi|308098193|gb|HO761364.1|HO761364
EST:     CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG                         TCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
genomic: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaattcatc ... tatgatgcagTCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
EST: gi|17020695|gb|BM091729.1|BM091729
EST:     CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG                         TCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
genomic: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaattcatc ... tatgatgcagTCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
EST: gi|17021210|gb|BM092244.1|BM092244
EST:     CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG                         TCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
genomic: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaattcatc ... tatgatgcagTCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
EST: gi|58023280|gb|CX710021.1|CX710021
EST:     CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG                         TCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
genomic: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaattcatc ... tatgatgcagTCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACATGGCGACCTCTACTTAAAACTTGCTAAGAAGGGTATAGAAAAAGGTGCAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaattcatcacattttcttgttaaatatcataaatgtatctgagactaatacgatcataagatcatttgaaaagtgcatatcatcatgtcagatttatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA