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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTGGGAACTCCAACAAGGGAAGAGATAAAGTGCATGAATCCTAACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAGgtatcacaaataaatttaatagcctttcgtgttttatactttattcaccatagtgaaaatactaatatatctagtaacttgtcttgtttagcgcaccacactgataaatttgttgatttggtccttctag

Basic information

species Glycine max
transcript GLYMA03G38850.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G38850.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 10
GTTCTGGGAACTCCAACAAGGGAAGAGATAAAGTGCATGAATCCTAACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAGgtatcacaaataaatttaatagcctttcgtgttttatactttattcaccatagtgaaaatactaatatatctagtaacttgtcttgtttagcgcaccacactgataaatttgttgatttggtccttctag
||| |||| |||||||||||||| || || || |||||||| || ||||| || || || |||||||| || |||||||| || |||||||||||||||  | |||| ||  |||  || |    | |  | |  ||   ||| | ||    ||||  | || |||  |    ||||  |||                                            
GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaatcaaagtaaatgcat---atatagtttgtttctctcatcttatcataaatttttatttattcatatccttg--ttgccag----------------------------------------

upper sequence: GLYMA03G38850.2 (Glycine max), 5'ss of exon 10
lower sequence: PP1S60_85V6.1 (Physcomitrella patens), 5'ss of exon 9
GTTCTGGGAACTCCAACAAGGGAAGAGATAAAGTGCATGAATCCTAACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAGgtatcacaaataaatttaatagcctttcgtgttttatactttattcaccatagtgaaaatactaatatatctagtaacttgtcttgtttagcgcaccacactgataaatttgttgatttggtccttctag
||  ||||||| || ||  | || |||||||||||||||||||| ||||||||||| || || || || || || || || || || |||||||| ||||      |   |  |    |  ||    | ||   ||||  | |   ||||  | |     | || |     | | ||| ||  |  | ||       |                            
GTGTTGGGAACACCGACTCGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCGTGGCACAAAgtatgtggtctttgtgaatgcactgtttccatcttgggctttggt-agtgtagtccagaagtggagatgtacg--accgtgttttcgtgtgagcggtgggttt---------------------------

upper sequence: GLYMA03G38850.2 (Glycine max), 5'ss of exon 10
lower sequence: PP1S74_168V6.1 (Physcomitrella patens), 5'ss of exon 8
GTTCTGGGAACTCCAACAAGGGAAGAGATAAAGTGCATGAATCCTAACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAGgtatcacaaataaatttaatagcctttcgtgttttatactttattcaccatagtgaaaatactaatatatctagtaacttgtcttgtttagcgcaccacactgataaatttgttgatttggtccttctag
||  |||| || || ||| | || |||||||||||||||||||| ||||||||||| || || || || || ||||| || ||||| ||||||||||||   |   |   | |  |||   |  | || |  | ||||    |   || ||    ||  | |  ||     | | |  | ||| |     |  ||  ||||                         
GTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAGgtacggctggtctgtgtgttagtggtctg-gtatggtgctttggagat-gtactg----taacagttgattggaaagcgttacctgtattcataataacggtgatt------------------------

upper sequence: GLYMA03G38850.2 (Glycine max), 5'ss of exon 10
lower sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
GTTCTGGGAACTCCAACAAGGGAAGAGATAAAGTGCATGAATCCTAACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAGgtatcacaaataaatttaa--tagcctttcgt-gttttatactttattcaccatagtgaaaatactaatatatctagtaac--ttgtcttg--tttagcgcacc--acactgataaatttgttgatttggtccttctag----------------------------------------------------
||  | || || || ||| | || |||||||||||||||||||| ||||||||||| || || || || || ||||| || || || |||||||||||||      ||  |||    ||||  ||  | ||  | || | |||  |    |  | || ||    | |      ||    |  | |||  ||| |        || ||| ||    |  ||||| ||    |  ||                                                    
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggttagctatttttagtggtctattatata-atttgataggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag

upper sequence: GLYMA03G38850.2 (Glycine max), 5'ss of exon 10
lower sequence: EFJ07923 (Selaginella moellendorffii), 5'ss of exon 10
GTTCTGGGAACTCCAACAAGGGAAGAGATAAAGTGCATGAATCCTAACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAGgtatcacaaataaattta-atagcctttcgtgttttatactttattcaccatagtgaaaatactaatatatctagtaacttgtcttgtttagcgcaccacactgataaatttgttgatttggtccttctag
||  | || ||||| ||  |||| || || || ||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||  |  ||| |      ||| |  |   | | |    ||| ||    |    ||| |                                                                        
GTCTTAGGTACTCCTACTCGGGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAGgtaagagcaatcatccggtatatctctctctctgtctctcttgatgtggctcgttgacag-----------------------------------------------------------------------

upper sequence: GLYMA03G38850.2 (Glycine max), 5'ss of exon 10
lower sequence: EFJ07216 (Selaginella moellendorffii), 5'ss of exon 10
GTTCTGGGAACTCCAACAAGGGAAGAGATAAAGTGCATGAATCCTAACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAGgtatcacaaataaattta-atagcctttcgtgttttatactttattcaccatagtgaaaatactaatatatctagtaacttgtcttgtttagcgcaccacactgataaatttgttgatttggtccttctag
||  | || ||||| ||  | || || || || ||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||  |  ||| |      ||| |  |   | | |    ||| ||    |    ||| |                                                                        
GTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAGgtaagagcaatcatccggtatatctctctctctgtctctcttgatgtggctcgttgacag-----------------------------------------------------------------------

upper sequence: GLYMA03G38850.2 (Glycine max), 5'ss of exon 10
lower sequence: EFJ04915 (Selaginella moellendorffii), 5'ss of exon 9
GTTCTGGGAACTCCAACAAGGGAAGAGATAAAGTGCATGAATCCTAACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAGgtatcacaaataaatttaatagcctttcgtgttttatactttattcaccatagtgaaaatactaatatatctagtaacttgtcttgtttagcgcaccacactgataaatttgttgatttggtccttctag
||||| ||||| || ||  | || ||||| ||||| |||||||| |||||||||||||| || ||||| || || || || || || |||||||||||  |  |   || ||      | ||    |     |  ||||   |  |  |||  |                                                                        
GTTCTTGGAACCCCTACTCGCGAGGAGATCAAGTGTATGAATCCCAACTACACGGAATTCAAGTTCCCTCAAATCAAGGCCCACCCTTGGCACAAGgtg-cgtaggcaactt------ctttgttggggcggtcgtttacgtagtaacgtggcag-----------------------------------------------------------------------

upper sequence: GLYMA03G38850.2 (Glycine max), 5'ss of exon 10
lower sequence: EFJ10962 (Selaginella moellendorffii), 5'ss of exon 9
GTTCTGGGAACTCCAACAAGGGAAGAGATAAAGTGCATGAATCCTAACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAGgtatcacaaataaatttaatagcctttcgtgttttatactttattcaccatagtgaaaatactaatatatctagtaacttgtcttgtttagcgcaccacactgataaatttgttgatttggtccttctag
||||| ||||| || ||  | || ||||| ||||| |||||||| |||||||||||||| || ||||| || || || || ||||| |||||||||||  |  |   || ||      | ||    |     |  ||||   |  |  |||  |                                                                        
GTTCTTGGAACCCCTACTCGCGAGGAGATCAAGTGTATGAATCCCAACTACACGGAATTCAAGTTCCCTCAAATCAAGGCCCATCCTTGGCACAAGgtg-cgtaggcaactt------ctttgttggggcggtcgtttacgtagtaacgtggcag-----------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296807|gb|FG993105.1|FG993105
EST:     ACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAG                         ATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTGGTATCAAGACTA
genomic: ACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAGgtatcacaaa ... gtccttctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTA
EST: gi|15285595|gb|BI469486.1|BI469486
EST:     ACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAG                         ATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTA
genomic: ACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAGgtatcacaaa ... gtccttctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTA
EST: gi|21888144|gb|BQ741366.1|BQ741366
EST:     ACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAG                         ATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTA
genomic: ACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAGgtatcacaaa ... gtccttctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTA
EST: gi|19054267|gb|BM732934.1|BM732934
EST:     ACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAG                         ATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTA
genomic: ACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAGgtatcacaaa ... gtccttctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTA
EST: gi|22931093|gb|BU548232.1|BU548232
EST:     ACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAG                         ATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTA
genomic: ACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAGgtatcacaaa ... gtccttctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTA
EST: gi|21994002|gb|BQ785530.1|BQ785530
EST:     GCGCATCCATGGCACAAG                         ATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTA
genomic: GCGCATCCATGGCACAAGgtatcacaaa ... gtccttctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTA