Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGAGATAATTATTCTCCTGGATGGAAGTATTCTAATTGGGAAATGAAAGGTGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtcattaactttgtcctagtgttgcatcaattctcgtatttgtcattttgcttccacactgttagtttttcagtgaacatcaaataaatctctttggattttgcatag

Basic information

species Glycine max
transcript GLYMA03G38340.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G38340.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os12g25710.3 (Oryza sativa), 5'ss of exon 9
TAGAGATAATTATTCTCCTGGATGGAAGTATTCTAATTGGGAAATGAAAGGTGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtcattaactttgtcctagtgttgcatcaattctcgtatt---tgtcattttgctt-ccacactgttagtttttcagtgaacatcaaataaatctctttggattttgcatag
  | || || |||||||| ||||||||||||||  | ||||| |||||||| ||||||||||||||||| || || ||||| ||| | ||||| || |||||    |  |    ||   |  |  || || |    |  |   || ||  ||  || | | | || |  | |   | |   ||| || ||  |     |  |          
CCGCGAAAACTATTCTCCAGGATGGAAGTATTCCCACTGGGAGATGAAAGGCGTTCCTCTAAGAATTGAGATAGGTCCAAAAGATATGGCAAACAATCAGgtacagaggtcacaccatttaatttattaacttcattgatcagtggcacattaattactataatgct--tctaggactcttcataaagtagttaatgataaa----------

upper sequence: GLYMA03G38340.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G094123_T01 (Zea mays), 5'ss of exon 9
TAGAGATAATTATTCTCCTGGATGGAAGTATTCTAATTGGGAAATGAAAGGTGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtcattaactttgtcctagtgttgcatcaattctcgtatttgtcattttgcttccacactgttagtttttcagtgaacatcaaataaatctctttggattttgcatag-
  | || ||||| ||||| || |||||||||||  | ||||||||||||||||||||  | |||||||| ||||| ||||| ||| | ||||| || |||||   | | | | | |   |     ||||    || | |||   | || | |  |||| | ||   || | |      |||   || ||   ||    |    |||   
CCGTGAAAATTACTCTCCAGGTTGGAAGTATTCCCACTGGGAAATGAAAGGTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagtattttcc--tcgcaaatcaccattcatgttta--aattggat--cacattttt---ttgttaactcttatcttttatattaattaatgtgccacatgaa

upper sequence: GLYMA03G38340.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G62120.2 (Arabidopsis thaliana), 5'ss of exon 9
TAGAGATAATTATTCTCCTGGATGGAAGTATTCTAATTGGGAAATGAAAGGTGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtcattaactttgtcctagtgttgcatcaattctcgt-atttgtcattttgcttccacactgttagtttttcagtg-aacatcaaataaatctctttggattttgcatag-------
 || || || || ||||||||||||||||||||  | ||||||||||| ||||||||  | || ||||| ||||| || |  ||  ||| |||| | ||||||| |   |||     | | |  |||||||||     |  | | || |||     |      | ||||     || ||| |  |||  | ||    ||||||    ||        
AAGGGACAACTACTCTCCTGGATGGAAGTATTCAGACTGGGAAATGAAGGGTGTTCCATTGAGGATTGAGATTGGTCCCAGAGACCTAGAAAATGATCAGgtcagtccgttt-----aatatctcatcaattccttcgacatataatattgaagtaa-gtgcctggtttaaatatgtaacttgtaatgtagctaaacggatttcatttatcccatag

upper sequence: GLYMA03G38340.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv07s0005g02620.t01 (Vitis vinifera), 5'ss of exon 10
TAGAGATAATTATTCTCCTGGATGGAAGTATTCTAATTGGGAAATGAAAGGTGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtc--attaactttgtc-ctagtgttgcatcaattct-cgtatttgtcattttgcttccacactgt-------tagtttttcagtgaacatcaaataaatctctttggattttgcatag------------------------------
||||||||| ||||| || || |||||||||||  ||||||||||||| ||||||||||| |||||||| ||||||||||| || ||||| || ||||||||     |||     |  ||| | ||   ||  |||  |  ||||||   ||   |     | |||        |||  |  |  | |  || | |  ||  ||||   || |  |  |                              
TAGAGATAACTATTCACCAGGTTGGAAGTATTCACATTGGGAAATGAAGGGTGTTCCTCTTAGAATTGAGATTGGGCCAAAAGACTTAGCTAACAAGCAGgtatgggtaatccaattgctatttttatttcctttcaaccaatttgtttcttctttatattattgtgtctgttcagtactctatggtatttccatttcattgcttttacttatttactggaagaatgatatattttgttctatccacag

upper sequence: GLYMA03G38340.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S7_175V6.1 (Physcomitrella patens), 5'ss of exon 8
TAGAGATAATTATTCTCCTGGATGGAAGTATTCTAATTGGGAAATGAAAGGTGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgt----cattaactttg----tcctagtgttgc--------atcaatt-ctcgtatttgtcattttgcttccacactgttag--------tttttcagtgaacatcaaataaatctctttggattttgcatag
 ||||||||||| ||||||||||||||||| ||| |||||||  | |||||||| ||  | |||||||||||||| || | |||  | | ||||||||||||    |||||||| ||    |     ||   |        ||  ||| ||  ||  | | ||| || |   |    ||| |        |||| | ||  | || ||||  ||    |   |||        
GAGAGATAATTACTCTCCTGGATGGAAGTACTCTCATTGGGAGCTAAAAGGTGTACCCTTGAGAATTGAAATTGGTCCCAGGGACATTGAAAATAAGCAGgtatagcattaactatgaggatttcgttgcgaccatcactgattgattactactacatataattctgttgtgaagtggtttgggtgctgcttttactgttgagattaaatttattgtctgaaattacag----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151404914|gb|EV274728.1|EV274728
EST:     GTGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAG                         GTTCGTGCTGTTCGACGTGATAATGGAGCAAAGATAGACATTGCTAGTGCT
genomic: GTGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtcattaact ... ttttgcatagGTTCGTGCTGTTCGACGTGATAATGGAGCAAAGATAGACATTGCTAGTGCT
EST: gi|193711552|gb|FK643017.1|FK643017
EST:     GTGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAG                         GTTCGTGCTGTTCGACGTGATAATGGAGCAAAGATAGACATTGCTAGTGCT
genomic: GTGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtcattaact ... ttttgcatagGTTCGTGCTGTTCGACGTGATAATGGAGCAAAGATAGACATTGCTAGTGCT
EST: gi|193486463|gb|FK449988.1|FK449988
EST:     GTGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAG                         GTTCGTGCTGTTCGACGTGATAATGGAGCAAAGATAGACATTGCTAGTGCT
genomic: GTGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtcattaact ... ttttgcatagGTTCGTGCTGTTCGACGTGATAATGGAGCAAAGATAGACATTGCTAGTGCT
EST: gi|192304984|gb|FG996116.1|FG996116
EST:     GTGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAG                         GTTCGTGCTGTTCGACGTGATAATGGAGCAAAGATAGACATTGCTAGTGCT
genomic: GTGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtcattaact ... ttttgcatagGTTCGTGCTGTTCGACGTGATAATGGAGCAAAGATAGACATTGCTAGTGCT