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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCAATAATGAAAGGCTTACGGCATCCAAACATTGTTTTACTTATGGGTGCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAGgttttacaatatctcatctaccggttcctttacctttcctcctataagagggatctcttttcatggctataaaatatcttacacttgagacctaaaggatttgattgaactgtgcag

Basic information

species Glycine max
transcript GLYMA03G34890.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G34890.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os09g39320.1 (Oryza sativa), 5'ss of exon 10
TTGCAATAATGAAAGGCTTACGGCATCCAAACATTGTTTTACTTATGGGTGCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAGgt---tttacaatatctcatctaccggttcctttacctttcctcctataagagggatctcttttcatggctataaaatatcttacacttgagacctaaaggatttgattgaactgtgcag
|||||||||||||| || |  | |||||||| |||||| |  | |||||||| || ||| ||||||| || |||||||| || |||||||| ||||||||||    ||   || |  | || | |  |||| |||  | ||          |   || |  |  || |  | |||  | ||   ||  |||  ||       ||| |||| |        
TTGCAATAATGAAAAGCCTGAGACATCCAAATATTGTTCTTTTCATGGGTGCTGTTACTGAGCCTCCCAACCTATCAATAGTTACAGAATACTTGTCAAGgtatggttgtgatgtgccttcaagctattccgttaattatctc--------aatcatttgatagcaag--tttaatgtgtccagcaagtgatgcc----atttttcattgcag-------

upper sequence: GLYMA03G34890.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G059671_T01 (Zea mays), 5'ss of exon 8
TTGCAATAATGAAAGGCTTACGGCATCCAAACATTGTTTTACTTATGGGTGCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAGgttttacaatatctcatctaccggttcctttacctttcctcctataagagggatctcttttcatggctataaaatatcttacacttgaga-cctaaaggatttgattgaactgtgcag
||||||| |||| | | || || ||||| ||||||||| | ||||||||||| |||||| |||| ||||| || |||||||| || |||||  | ||||||| |  |     || |  | | |  |      |||||     ||||  |      ||| | ||   ||| |     ||  |   |  ||| | |||    |||| ||    |||||||
TTGCAATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGTGCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAAGgtgtgtc-----cttactttctgaat-----gccttttgaaatatacta------tctgtgcacctctagagttagtccaaggttccagaacttaacctttttgttttctatgtgcag

upper sequence: GLYMA03G34890.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G03730.2 (Arabidopsis thaliana), 5'ss of exon 9
TTGCAATAATGAAAGGCTTACGGCATCCAAACATTGTTTTACTTATGGGTGCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAGgttttacaatatctcatctaccggttcctttacctttcctcctataagagggatctcttttcatggctataaaat-atcttacacttgagacctaaaggatttgattgaactgtgcag
|||| ||||||||| || | || || || ||||||||| |  | |||||||| |||||| | ||||| ||| | ||||| || ||||||||||||||||||   ||||||  ||    |   ||    |||    | |    | || ||    |  | | | ||| || ||| |  ||  |    || | ||                          
TTGCGATAATGAAACGCCTTCGCCACCCTAACATTGTTCTCTTCATGGGTGCGGTCACTCAACCTCCAAATTTGTCAATAGTGACAGAATATTTGTCAAGg---tacaattacttggat-ttggaaggtttgatgtactgagtgta-gaattttggcctataatgactctaataccatgatttctttcaaacag------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207782482|gb|GD754935.1|GD754935
EST:     GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAG                         GGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGA
genomic: GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAGgttttacaat ... aactgtgcagGGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGA
EST: gi|193419164|gb|FK381848.1|FK381848
EST:     GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAG                         GGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGA
genomic: GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAGgttttacaat ... aactgtgcagGGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGA
EST: gi|33387541|gb|CA850748.1|CA850748
EST:     GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAG                         GGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGA
genomic: GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAGgttttacaat ... aactgtgcagGGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGA
EST: gi|193424026|gb|FK386781.1|FK386781
EST:     GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAG                         GGGTAGCTTGTATAGGCTGTTGCATAAAACCTGGTGCCACAGAGATGTTGG
genomic: GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAGgttttacaat ... aactgtgcagGGGTAGCTTGTATAGGCTGTTGCATAAA-CCTGGTGCCACAGAGATGTTGG
EST: gi|208154550|gb|GD956695.1|GD956695
EST:     GCAGTCACTAAGCCTCCTAATTTATCAATTGTCACGGAATATTTGTCAAG                         GGGTAGCTTGTACAGGCTGTTGCATAAACCTGG
genomic: GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAGgttttacaat ... aactgtgcagGGGTAGCTTGTATAGGCTGTTGCATAAACCTGG
EST: gi|193517192|gb|FK473432.1|FK473432
EST:     TCACGGAATATTTGTCAAG                         GGGTAGCTTGTACAGGCTGTTGCATAAACCTGGCGCTACAGAGATGTTGGA
genomic: TCACAGAATATTTGTCAAGgttttacaat ... aactgtgcagGGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGA
EST: gi|207795547|gb|GD766852.1|GD766852
EST:     GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAG                         GGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGA
genomic: GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAGgttttacaat ... aactgtgcagGGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGA
EST: gi|193413912|gb|FK380079.1|FK380079
EST:     GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAG                         GGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGA
genomic: GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAGgttttacaat ... aactgtgcagGGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGA
EST: gi|208086610|gb|GD884194.1|GD884194
EST:     GCAGTCACTAAGCCTCCTAATTTATCAATTGTCACGGAATATTTGTCAAG                         GGGTAGCTTGTACAGGCTGTTGCATAAACCTGG
genomic: GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAGgttttacaat ... aactgtgcagGGGTAGCTTGTATAGGCTGTTGCATAAACCTGG
EST: gi|208213300|gb|GE012737.1|GE012737
EST:     GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAG                         GGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGA
genomic: GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAGgttttacaat ... aactgtgcagGGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGA
EST: gi|254324292|gb|GR840609.1|GR840609
EST:     GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAG                         GGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGA
genomic: GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAGgttttacaat ... aactgtgcagGGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGA