Sequence
atgc intronic sequence ATGC exonic sequenceGTCAGTGGAGTTGCTTTTGATTCATATTGGACATCACCAAATTCAAATGACAATGGAGAGACTGTTACATATCGTTTTGGTTCTGTTGGTCAGgtgctcagaaaaatgtttcattataatttttactttttctttgtgtagcttttcattctaagtaaaactcattggtatacctaacatggatctgtggtag...
Basic information
species | Glycine max |
transcript | GLYMA03G33740.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G33740.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os12g07450.3 (Oryza sativa), 5'ss of exon 10
GTCAGTGGAGTTGCTTTTGATTCATATTGGACATCACCAAATTCAAATGACAATGGAGAGACTGTTACATATCGTTTTGGTTCTGTTGGTCAGgtgctcagaaaaatgtttcatt------ataatttttactttttctttgtgtagcttttcattctaagtaaaactcattggtatacctaacatggatctgtggtag
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GTCAGTGGAGTTTCTTTTGATTCGTATTGGTCTCCTCCGAATTCTGATGGAACAGGAGAAAATACCGTGTATCGTTTTGGTTCTGTTGGTCAGgta-tcacaaatttatatagctggagatatagtatgcagtctgtgcttttatgacatgtcctta-atgtttaactcat--gtagtatcaaagtttctttttgag--
upper sequence: GLYMA03G33740.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G096070_T01 (Zea mays), 5'ss of exon 10
GTCAGTGGAGTTGCTTTTGATTCATATTGGACATCACCAAATTCAAATGACAATGGAGAGACTGTTACATATCGTTTTGGTTCTGTTGGTCAGgtgctcagaaaaatgtttcattataatttttactttttctttgtgtagcttttcattctaagtaaaactcattggtatacctaacatgg--atctgtggtag
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GTCAGTGGAGTTGCTTTTGATTCATATTGGTCCCCACCAAGTTCTGATGGAAATGGAGAAAATGT---ATATCGCTTTGGTTCTGTTGGGCAGgtatgcctagtt-tatatagttagaattagtttgaattttgaatattgcaacgcaacttatgtgtgttcaaaatatatgggaattgttgcaagctctaatt-
upper sequence: GLYMA03G33740.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 10
GTCAGTGGAGTTGCTTTTGATTCATATTGGACATCACCAAATTCAAATGACAATGGAGAGACTGTTACATATCGTTTTGGTTCTGTTGGTCAGgtgctcagaaaaatgtttcattataatttttactttttctttgtgtagcttttcattctaagtaaaactcattggtatacctaacatggatctgtggtag-
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GTCAGTGGAGTGGCTTTTGATCCATTTTGGTCACCGCCAAATTCAGATGGCACGGGGGAAAATATTGTGTATCGTTTTGGTTCTGTTGGTCAGgtatgcaaaaaacatctgtatggtcatggattatcatcaatatcatggatgacaaatttcatcagcgatggatatcttttctta-gtgatctccttatatcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17023019|gb|BM094053.1|BM094053EST: CAAATGACAATGGAGAGACTGTTACATATCGTTTTGGTTCTGTTGGTCAG GATACACAATTGCTTCTGTGGGACCTGGAAATGGACGAGATTGTAGTGCCC
genomic: CAAATGACAATGGAGAGACTGTTACATATCGTTTTGGTTCTGTTGGTCAGgtgctcagaa ... tggtgatcagGATACACAATTGCTTCTGTGGGACCTGGAAATGGACGAGATTGTAGTGCCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCAGTGGAGTTGCTTTTGATTCATATTGGACATCACCAAATTCAAATGACAATGGAGAGACTGTTACATATCGTTTTGGTTCTGTTGGTCAGgtgctcagaaaaatgtttcattataatttttactttttctttgtgtagcttttcattctaagtaaaactcattggtatacctaacatggatctgtggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA