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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAACAGCCCAACATGCCAAGCTTCCACCAACATTGTCCATATTCAGCAACTTTCTACTAGGTGAAATATTTTCACAGgtacaaaatgttcatacatattaatgatgttctaatattcagattttatttatatctacttgaattaatagtttggatggccccaaaaggcttgagatgatacactgctcttctgcatgatcag

Basic information

species Glycine max
transcript GLYMA03G23870.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13125744|gb|BG316314.1|BG316314
EST:     CAACATTGTCCATATTCAGCAACTTTCTACTAGGTGAAATATTTTCACAG                         GATCCATTAAGGGCCAGTGACAAAGCTCTAACAAGCTGTGGCCCCTATAAA
genomic: CAACATTGTCCATATTCAGCAACTTTCTACTAGGTGAAATATTTTCACAGgtacaaaatg ... gcatgatcagGATCCATTAAGGGCCAGTGACAAAGCTCTAACAAGCTGTGGCCCCTATAAA
EST: gi|27425710|gb|CA937230.1|CA937230
EST:     CAACATTGTCCATATTCAGCAACTTTCTACTAGGTGAAATATTTTCACAG                         GATCCATTAAGGGCCAGTGACAAAGCTCTAACAAGCTGTGGCCCCTATAAA
genomic: CAACATTGTCCATATTCAGCAACTTTCTACTAGGTGAAATATTTTCACAGgtacaaaatg ... gcatgatcagGATCCATTAAGGGCCAGTGACAAAGCTCTAACAAGCTGTGGCCCCTATAAA
EST: gi|31456481|gb|CD398509.1|CD398509
EST:     CAACATTGTCCATATTCAGCAACTTTGTACTAGGTG-AATATTTTCACAG                         GATCCATTAAGGGCCAGTGACAAAGCTCTAACAAGCTGTGGCCCCTATAAA
genomic: CAACATTGTCCATATTCAGCAACTTTCTACTAGGTGAAATATTTTCACAGgtacaaaatg ... gcatgatcagGATCCATTAAGGGCCAGTGACAAAGCTCTAACAAGCTGTGGCCCCTATAAA
EST: gi|22525661|gb|BU084472.1|BU084472
EST:     CAACATTGTCCATATTCAGCAACTTTCTACTAGGTGAAATATTTTCACAG                         GATCCATTAAGGGCCAGTGACAAAGCTCTAACAAGCTGTGGCCCCTATAAA
genomic: CAACATTGTCCATATTCAGCAACTTTCTACTAGGTGAAATATTTTCACAGgtacaaaatg ... gcatgatcagGATCCATTAAGGGCCAGTGACAAAGCTCTAACAAGCTGTGGCCCCTATAAA
EST: gi|15287093|gb|BI470984.1|BI470984
EST:     GAAATATTTTCACAG                         GATCCATTAAGGGCCAGTGACAAAGCTCTAACAAGCTGTGGCCCCTATAAA
genomic: GAAATATTTTCACAGgtacaaaatg ... gcatgatcagGATCCATTAAGGGCCAGTGACAAAGCTCTAACAAGCTGTGGCCCCTATAAA
EST: gi|23053050|gb|BU577541.1|BU577541
EST:     CAACATTGTCCATATTCAGCAACTTTCTACTAGGTGAAATATTTTCACAG                         GATCCATTAAGGGCCAGTGACAAAGCTCTAACAAGCTGTGGCCCCTATAAA
genomic: CAACATTGTCCATATTCAGCAACTTTCTACTAGGTGAAATATTTTCACAGgtacaaaatg ... gcatgatcagGATCCATTAAGGGCCAGTGACAAAGCTCTAACAAGCTGTGGCCCCTATAAA