Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAGCTCCAAAGCCTTGAAGGTTGCCTGTAATCTAAACAATGCAGCATGCAAGTTGAAATTAAAAGATTATAAACAAGCAGAGAAATTGTGCACAAAGgtatggctgctgtatcctatcagatggtaatagaaaaaatcactttacgtgcttagcaaaaactgattcttaattttttgacaagcag

Basic information

species Glycine max
transcript GLYMA03G21690.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G21690.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G25230.2 (Arabidopsis thaliana), 5'ss of exon 10
GAAGAGCTCCAAAGCCTTGAAGGTTGCCTGTAATCTAAACAATGCAGCATGCAAGTTGAAATTAAAAGATTATAAACAAGCAGAGAAATTGTGCACAAAGgtatggctgctgtatcctatcagatggtaa-tagaaaaaatcactttacgtgcttagca----aaaactgattc---ttaattttttgacaagcag
||||    | ||||| |||||||| || || ||||||||| ||||||| |||||  | ||||| |||||||| || || || || ||| | ||||||||||||    |  |   |  | | |||    || |     |  ||| |||    || ||||     |||||||||     |     |||||  |   ||
GAAGCAAGCAAAAGCATTGAAGGTGGCATGCAATCTAAACGATGCAGCCTGCAAACTCAAATTGAAAGATTACAAGCAGGCCGAAAAACTATGCACAAAGgtaataataattggttgt-taagaccacaagtcctttatgtcagttttaaagcctagctgaacaaaactgatggagatggtggttttggtatttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7285868|gb|AW598355.1|AW598355
EST:     GCAAGTTGAAATTAAAAGATTATAAACAAGCAGAGAAATTGTGCACAAAG                         GTACTGGACCTTGAGAGTACTAATGTGAAGGCTCTCTATAGAAGGGCCCAG
genomic: GCAAGTTGAAATTAAAAGATTATAAACAAGCAGAGAAATTGTGCACAAAGgtatggctgc ... tgacaagcagGTACTGGACCTTGAGAGTACTAATGTGAAGGCTCTCTATAGAAGGGCCCAG
EST: gi|57574028|gb|CX547003.1|CX547003
EST:     GCAAGTTGAAATTAAAAGATTATAAACAAGCAGAGAAATTGTGCACAAAG                         GTACTGGACCTTGAGAGTACTAATGTGAAGGCTCTCTATAGAAGGGCCCAG
genomic: GCAAGTTGAAATTAAAAGATTATAAACAAGCAGAGAAATTGTGCACAAAGgtatggctgc ... tgacaagcagGTACTGGACCTTGAGAGTACTAATGTGAAGGCTCTCTATAGAAGGGCCCAG
EST: gi|58014983|gb|CX701725.1|CX701725
EST:     GCAAGTTGAAATTAAAAGATTATAAACAAGCAGAGAAATTGTGCACAAAG                         GTACTGGACCTTGAGAGTACTAATGTGAAGGCTCTCTATAGAAGGGCCCAG
genomic: GCAAGTTGAAATTAAAAGATTATAAACAAGCAGAGAAATTGTGCACAAAGgtatggctgc ... tgacaagcagGTACTGGACCTTGAGAGTACTAATGTGAAGGCTCTCTATAGAAGGGCCCAG
EST: gi|192333549|gb|FK026850.1|FK026850
EST:     GCAAGTTGAAATTAAAAGATTATAAACAAGCAGAGAAATTGTGCACAAAG                         GTACTGGACCTTGAGAGTACTAATGTGAAGGCTCTCTATAGAAGGGCCCAG
genomic: GCAAGTTGAAATTAAAAGATTATAAACAAGCAGAGAAATTGTGCACAAAGgtatggctgc ... tgacaagcagGTACTGGACCTTGAGAGTACTAATGTGAAGGCTCTCTATAGAAGGGCCCAG
EST: gi|9900273|gb|BE609241.1|BE609241
EST:     AGAAATTGTGCACAAAG                         GTACTGGACCTTGAGAGTACTAATGTGAAGGCTCTCTATAGAAGGGCCCAG
genomic: AGAAATTGTGCACAAAGgtatggctgc ... tgacaagcagGTACTGGACCTTGAGAGTACTAATGTGAAGGCTCTCTATAGAAGGGCCCAG
EST: gi|193483590|gb|FK450635.1|FK450635
EST:     GCAAGTTGAAATTAAAAGATTATAAACAAGCAGAGAAATTGTGCACAAAG                         GTACTGGACCTTGAGAGTACTAA
genomic: GCAAGTTGAAATTAAAAGATTATAAACAAGCAGAGAAATTGTGCACAAAGgtatggctgc ... tgacaagcagGTACTGGACCTTGAGAGTACTAA
EST: gi|192316141|gb|FK011584.1|FK011584
EST:     GCAAGTTGAAATTAAAAGATTATAAACAAGCAGAGAAATTGTGCACAAAG                         GTACTGGACCTTGAGAGTACTAATGTGAAGGCTCTCTATAGAAGGGCCCAG
genomic: GCAAGTTGAAATTAAAAGATTATAAACAAGCAGAGAAATTGTGCACAAAGgtatggctgc ... tgacaagcagGTACTGGACCTTGAGAGTACTAATGTGAAGGCTCTCTATAGAAGGGCCCAG
EST: gi|192319168|gb|FK009108.1|FK009108
EST:     GCAAGTTGAAATTAAAAGATTATAAACAAGCAGAGAAATTGTGCACAAAG                         GTACTGGACCTTGAGAGTACTAATGTGAAGGCTCTCTATAGAAGGGCCCAG
genomic: GCAAGTTGAAATTAAAAGATTATAAACAAGCAGAGAAATTGTGCACAAAGgtatggctgc ... tgacaagcagGTACTGGACCTTGAGAGTACTAATGTGAAGGCTCTCTATAGAAGGGCCCAG
EST: gi|6666583|gb|AW278042.1|AW278042
EST:     GCAAGTTGAAATTAAAAGATTATAAACAAGCAGAGAAATTGTGCACAAAG                         GTACTGGACCTTGAGAGTACTAATGTGAAGGCTCTCTATAGAAGGGCCCAG
genomic: GCAAGTTGAAATTAAAAGATTATAAACAAGCAGAGAAATTGTGCACAAAGgtatggctgc ... tgacaagcagGTACTGGACCTTGAGAGTACTAATGTGAAGGCTCTCTATAGAAGGGCCCAG
EST: gi|9900283|gb|BE609251.1|BE609251
EST:     AGAAATTGTGCACAAAG                         GTACTGGACCTTGAGAGTACTAATGTGAAGGCTCTCTATAGAAGGGCCCAG
genomic: AGAAATTGTGCACAAAGgtatggctgc ... tgacaagcagGTACTGGACCTTGAGAGTACTAATGTGAAGGCTCTCTATAGAAGGGCCCAG
EST: gi|57574341|gb|CX547316.1|CX547316
EST:     GCAAGTTGAAATTAAAAGATTATAAACAAGCAGAGAAATTGTGCACAAAG                         GTACTGGACCTTGAGAGTACTAATGTGAAGGCTCTCTATAGAAGGGCCCAG
genomic: GCAAGTTGAAATTAAAAGATTATAAACAAGCAGAGAAATTGTGCACAAAGgtatggctgc ... tgacaagcagGTACTGGACCTTGAGAGTACTAATGTGAAGGCTCTCTATAGAAGGGCCCAG
EST: gi|192316140|gb|FK011583.1|FK011583
EST:     GCAAGTTGAAATTAAAAGATTATAAACAAGCAGAGAAATTGTGCACAAAG                         GTACTGGACCTTGAGAGTACTAATGTGAAGGCTCTCTATAGAAGGGCCCAG
genomic: GCAAGTTGAAATTAAAAGATTATAAACAAGCAGAGAAATTGTGCACAAAGgtatggctgc ... tgacaagcagGTACTGGACCTTGAGAGTACTAATGTGAAGGCTCTCTATAGAAGGGCCCAG
EST: gi|10254863|gb|BE822629.1|BE822629
EST:     GCAAGTTGAAATTAAAAGATTATAAACAAGCAGAGAAATTGTGCACAAAG                         GTACTGGACCTTGAGAGTACTAATGTGAAGGCTCTCTATAGAAGGGCCCAG
genomic: GCAAGTTGAAATTAAAAGATTATAAACAAGCAGAGAAATTGTGCACAAAGgtatggctgc ... tgacaagcagGTACTGGACCTTGAGAGTACTAATGTGAAGGCTCTCTATAGAAGGGCCCAG