Sequence
atgc intronic sequence ATGC exonic sequenceATATATTCTTCCCCAACTGTTGTAGATTTGGATGGTGATGGGAATCTTGACATTCTTGTTGGAACTTCATATGGCCTGTTTTATGTGTTAGATCATCATGgtaatgtctagggactgcttccttactattactcttgttttaaaaacgttcaggtttctatgttgccttcattgattttctcagattttatttcgttaat...
Basic information
species | Glycine max |
transcript | GLYMA03G14690.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G14690.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os03g61050.1 (Oryza sativa), 5'ss of exon 8
ATATATTCTTCCCCAACTGTTGTAGATTTGGATGGTGATGGGAATCTTGACATTCTTGTTGGAACTTCATATGGCCTGTTTTATGTGTTAGATCATCATGgtaatgtctagggactgcttccttactattactcttgttttaaaaacg--ttcaggtttctatgttgccttcattg----attttctcagattttatttcgttaat
||||||||| || || || || ||||||||||||||||| ||| | || ||||||||||||||||| | |||| |||||||||| | ||||||| |||||| ||| | || | | | ||| | | |||| || | | | | ||| ||| || | | || | | | | ||
GCATATTCTTCGCCGACCGTGGTTGATTTGGATGGTGATGGAAATTTGGATATTCTTGTTGGAACTTCCTTTGGCTTGTTTTATGTTATCGATCATCGTGgtaaattcttaa-----cctcataatatcaattctgaatccataaacagctttaagctgacttattgttttctatgctgtgtatatctagctcccgtagcataaa-
upper sequence: GLYMA03G14690.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G479744_T01 (Zea mays), 5'ss of exon 4
ATATATTCTTCCCCAACTGTTGTAGATTTGGATGGTGATGGGAATCTTGACATTCTTGTTGGAACTTCATATGGCCTGTTTTATGTGTTAGATCATCATGgtaatgtctagggactgcttccttactattactcttgttttaaaaacgttcaggtttctatgttgccttcattgattttctcagattttatttcgtta-at---
| | ||| || |||||||| || ||||||||||||||||| || | ||||| ||| |||| ||| | |||||| |||||||||| | ||||||| |||||| || | || || | | || | | ||| | ||| ||| | | | || | ||| || || | | | || ||
GTGTTTTCCTCTCCAACTGTGGTTGATTTGGATGGTGATGGATATTTGGACATCCTTATTGGGACTGCTTATGGCTTGTTTTATGTTATTGATCATCGTGgtaa-gtttttggtctcttaatattttaaggattggatccaaaagaagttt---ttttgagctggtttttcctatattttgcacatatcaagtttctatataat
upper sequence: GLYMA03G14690.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv08s0007g01790.t01 (Vitis vinifera), 5'ss of exon 8
ATATATTCTTCCCCAACTGTTGTAGATTTGGATGGTGATGGGAATCTTGACATTCTTGTTGGAACTTCATATGGCCTGTTTTATGTGTTAGATCATCATGgtaatgtctagggactgcttccttactattactcttgttttaaaaacgttcaggtttctatgttgccttcattgattttctcagattttatttcgttaat-
||||||||||| ||||||||||| ||||||||||||||||||||| | ||||||||||||||||| || | ||| |||||||||| | ||||||||||||||| | || || || | ||| | | | | | | | | | || || | ||| | | |||| || || ||| ||| |
ATATATTCTTCTCCAACTGTTGTTGATTTGGATGGTGATGGGAATTTGGACATTCTTGTTGGAACCTCCTTCGGCTTGTTTTATGTCCTTGATCATCATGgtaatcttctaagattggaattttttttttaattctttctaattgatgcatatgattagatcatattttc-tcattattcttagcttgattttggtttaaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193312818|gb|FK282315.1|FK282315EST: CATTCTTGTTGGAACTTCATATGGCCTGTTTTATGTGTTAGATCATCATG GTAAGGTTAGAC-AAAGTTTCCTCTTGAAATGGCTGAGATTCAAGGAGCTG
genomic: CATTCTTGTTGGAACTTCATATGGCCTGTTTTATGTGTTAGATCATCATGgtaatgtcta ... tctcaaatagGTAAGGTTAGACAAAAGTTTCCTCTTGAAATGGCTGAGATTCAAGGAGCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATATATTCTTCCCCAACTGTTGTAGATTTGGATGGTGATGGGAATCTTGACATTCTTGTTGGAACTTCATATGGCCTGTTTTATGTGTTAGATCATCATGgtaatgtctagggactgcttccttactattactcttgttttaaaaacgttcaggtttctatgttgccttcattgattttctcagattttatttcgttaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA