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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTGCTGTGATTGCTGGAGCCATGATGCTTGGGCTGAGACTAGTTTTCATTACTATACATCCCATGAAgtaattaaactttgcaatctatgactatctatcattcatattgctttttaatttgcaatggtcacatactgcttctattgattactcactatgtgaacttatctatggcag

Basic information

species Glycine max
transcript GLYMA03G07890.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G07890.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G01460.1 (Arabidopsis thaliana), 5'ss of exon 10
CTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTGCTGTGATTGCTGGAGCCATGATGCTTGGGCTGAGACTAGTTTTCATTACTATACATCCCATGAAgtaattaaactttgcaatctatgactatctatcattcatattgctttttaatttgcaatggtcacatactgcttctattgattactcactatgtgaacttatctatggcag
|||| ||||| || ||||| ||||| || || |||||||| |||||||| || |||||||||||  |||  || || |||||||| || ||||| ||||||||||| | ||| | | | |   | | | | |         |||| |||      ||  | ||   |     ||||  || || ||||  |    || | |  | |  |||
CTGCCTTTGCTTTCTTCTGTTTCTATCTCCTACTTGCTGTTATTGCTGGGGCAATGATGCTTGGTTTGAAGCTGGTCTTCATTACCATTCATCCAATGAAgtaattcatctt-gtagttttgaaatgttttt---------tgctattt------cagagatc-tttctgttttcttctggtttctcataagcctaattaacttgtttcag

upper sequence: GLYMA03G07890.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G08930.1 (Arabidopsis thaliana), 5'ss of exon 10
CTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTGCTGTGATTGCTGGAGCCATGATGCTTGGGCTGAGACTAGTTTTCATTACTATACATCCCATGAAgtaattaaactttgcaatctatgactatctatcattcatattgctttttaatttgcaatggtcacatactgc-ttctattgattactcactatgtgaacttatctatggcag
|||| ||||| || ||||| ||||||||||| |||||||| || ||||| || |||||||| ||  |||  || || |||||||| || ||||| ||||||||||             | ||  ||| |     |  | |||  ||    |||| | | |||||   | | | |||| |||||| || | |      |   |  |||  |||
CTGCCTTTGCTTTCTTCTGTTTCTACCTTCTACTTGCTGTTATCGCTGGGGCAATGATGCTGGGTTTGAAGCTGGTCTTCATTACCATTCATCCAATGAAgtaat-------------ccat--ctaaccggtttcaacattatttggctattttccaaggtcattcattaccttctcttgattgctgattggccatatcaacttatttcag

upper sequence: GLYMA03G07890.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 10
CTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTGCTGTGATTGCTGGAGCCATGATGCTTGGGCTGAGACTAGTTTTCATTACTATACATCCCATGAAgtaattaaactttgcaatctatgactatctatcattcatattgctttttaatttgcaatggtcacatactgcttctattgattactcactatgtgaacttatctatggcag
| ||||||||||| ||||||||||||||||| ||||| |||||||| || || ||||||||||| || ||| ||||||||||||| || |||||||||||||||| ||| ||        |||      |  ||||  | ||  | |||  || |  || ||||       ||| |  ||||| || |||     ||||| ||| ||||||
CAGCATTTGCATTCTTCTGCTTCTACCTTCTGCTTGCGGTGATTGCAGGGGCAATGATGCTTGGACTTAGATTAGTTTTCATTACAATCCATCCCATGAAgtaatgaaaatt--------atggtg--ttgccattt-tgtta-tgtttggttggtcattgtcat------cttttggtgattgcttactgaaccaactt-tctttggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18730359|gb|BM525833.1|BM525833
EST:     GCCATGATGCTTGGGCTGAGACTAGTTTTCATTACTATACATCCCATGAA                         GTGGGGAGCGACACTCATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCT
genomic: GCCATGATGCTTGGGCTGAGACTAGTTTTCATTACTATACATCCCATGAAgtaattaaac ... tctatggcagGTGGGGAGCGACACTCATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCT
EST: gi|58025422|gb|CX712163.1|CX712163
EST:     GCCATGATGCTTGGGCTGAGACTAGTTTTCATTACTATACATCCCATGAA                         GTGGGGAGCGACACTCATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCT
genomic: GCCATGATGCTTGGGCTGAGACTAGTTTTCATTACTATACATCCCATGAAgtaattaaac ... tctatggcagGTGGGGAGCGACACTCATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCT
EST: gi|58015128|gb|CX701870.1|CX701870
EST:     TCATTACTATACATCCCATGAA                         GTGGGGAGCGACATTCATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCT
genomic: TCATTACTATACATCCCATGAAgtaattaaac ... tctatggcagGTGGGGAGCGACACTCATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCT
EST: gi|192326624|gb|FK018496.1|FK018496
EST:     GCCATGATGCTTGGGCTGAGACTAGTTTTCATTACTATACATCCCATGAA                         GTGGGGAGCGACACTCATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCT
genomic: GCCATGATGCTTGGGCTGAGACTAGTTTTCATTACTATACATCCCATGAAgtaattaaac ... tctatggcagGTGGGGAGCGACACTCATGAACTCTTTTCTGTTCAATGTGGGGCTTATTCT