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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATGCAAGAAATCCTTGATCAACAGATTGCAGAAGAAGCAGCTGAGGCTGAAGGGGATGGCGCAATGGCATCAGTTGCAAATCCTCGTAACACCGGCATgtatgttgtaatattttgtgatattgaaaatctataacaatggaagcaacccttgctggcatcttgttctatgatttacttgatagttttactgcattta...

Basic information

species Glycine max
transcript GLYMA03G03120.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os02g51430.1 (Oryza sativa), 5'ss of exon 9
AAATGCAAGAAATCCTTGATCAACAGATTGCAGAAGAAGCAGCTGAGGCTGAAGGGGATGGCGCAATGGCATCAGTTGCAAATCCTCGTAACACCGGCATgtatgttgtaatattttgtgatattgaaaatctataacaatggaagcaacccttgctggcatcttgttctatgatttacttgatagttttactgcattta----
|||||||||| ||||| ||||||||  ||||||||||||||||||||||||| || |  || || |||||  || | ||||| |  ||||  || |  | ||||| |      |||  |    |   | || | |  |  |     ||     |||| |  |  | |  ||| ||| |  | |||  |||  ||  |       
AAATGCAAGAGATCCTAGATCAACAAGTTGCAGAAGAAGCAGCTGAGGCTGAGGGTGCAGGTGCTATGGCGACAATAGCAAACCAGCGTAGAACTGCAAAgtatgcttcttcctttctttgcttcacacatgttt--ctgtacttccagtaggtgctag-gtagtatgatat-attgatattatatctttcatgtttcagagga

upper sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G070045_T01 (Zea mays), 5'ss of exon 4
AAATGCAAGAAATCCTTGATCAACAGATTGCAGAAGAAGCAGCTGAGGCTGAAGGGGATGGCGCAATGGCATCAGTTGCAAATCCTCGTAACACCGGCATgtatgttgtaatattttgtgatattgaaaatctataacaatggaagcaacccttgctggcatcttgttctatgatttacttgatagt-tttactgcattta---
|||||||||| ||| | ||||||||  ||||||||||||||||||||||||| || | ||| || |||||  || |  |||| |  ||||  || |  | |||   |    |   |    | ||   |||| | |     |  | | |     ||||    | || |  ||||  | |  |   | | | |  |||||||    
AAATGCAAGAGATCTTAGATCAACAAGTTGCAGAAGAAGCAGCTGAGGCTGAGGGTGCTGGTGCTATGGCGACAATAACAAACCAACGTAGAACTGCAAAgtacacttcttttcctcactagat---aaatttctgttcttcca-gtatgttatgctatgctattatgatatgtgtaatgtagaaatatgtcttgcattttgca

upper sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G71820.2 (Arabidopsis thaliana), 5'ss of exon 10
AAATGCAAGAAATCCTTGATCAACAGATTGCAGAAGAAGCAGCTGAGGCTGAAGGGGATGGCGCAATGGCATCAGTTGCAAATCCTCGTAACACCGGCATgtatgttgtaatattttgtgatattgaaaatctataacaatggaagcaacccttgctggcatcttgttctatgatttacttgatagttttactgcatt-ta------------------------------------------------------------------------------------------------
| ||||||||||| || || |||||| |||| ||||||||||| |||||||| || || || || |||||||| || ||||||||||| |   | |||| ||  ||  | ||||||| || |  |     |||  |    | |    | |  ||  |   |   | ||  |   |||   |    |||| |||    | ||                                                                                                
AGATGCAAGAAATTCTAGACCAACAGCTTGCTGAAGAAGCAGCAGAGGCTGAGGGAGAAGGTGCGATGGCATCTGTAGCAAATCCTCGAAGGCCTGGCAAgtgagtc-tgatattttttgttcgtatttgtcttgatttgttgtcttatctgttattcaaaatatctttcacttttttactaggggtttgactaagctatattttgcattgatttaatgtcctgaaaagcaatggaattttattaaagtccccataatcatttgtgacatgtcctatatttattctgttgaatccag

upper sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv12s0034g02360.t01 (Vitis vinifera), 5'ss of exon 9
AAATGCAAGAAATCCTTGATCAACAGATTGCAGAAGAAGCAGCTGAGGCTGAAGGGGATGGCGCAATGGCATCAGTTGCAAATCCTCGTAACACCG----GCATgtatgttgtaatattttgtgatattgaaaatctataacaatggaagcaacccttgctggcatcttgttctatgatttacttgatagttttac-tgcattta---------------------------------------------------------------------------------
|||||||||||||||||||||||||  |||| || |||||||| |||||||| || |  ||  | ||||||||| |||||||||||||||  || |    | |  ||  ||| | |  |||   | |||||   |   || |  |  |    |   ||  |  |         | |||| |      | |  || | | ||| |                                                                                  
AAATGCAAGAAATCCTTGATCAACAACTTGCTGAGGAAGCAGCCGAGGCTGAGGGAGGAGGGACCATGGCATCAATTGCAAATCCTCGTAGAACTGCAAAgtagctaccttgaactggtttccaagattga---ttagtatctctctatttgatgtttattatctctccccattctgatctggacattgggattccatacatctgtcctgacatgttttatacttcactgtccttggagggatgcaatgtattatatgatgttgattgaatccttattctctgcag

upper sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv03s0097g00670.t01 (Vitis vinifera), 5'ss of exon 9
AAATGCAAGAAATCCTTGATCAACAGATTGCAGAAGAAGCAGCTGAGGCTGAAGGGGATGGCGCAATGGCATCAGTTGCAAATCCTCGTAACACCGGCATgtatgttgtaatattttgtgatattgaaaatctataacaatggaagcaacccttgctggc-atcttgttctatgatttacttgatagttttactgcattta--------------------------------------------------------------------------------------
|||||||||||||||||||||||||  |||| || |||||||| |||||||| || |  ||  | ||||||||| |||||||||||||||  || |  | ||| | |    |    ||  || |  || ||  || |  ||     ||     || ||   ||||    | ||  |   || || | |   | | |||  |                                                                                      
AAATGCAAGAAATCCTTGATCAACAACTTGCTGAGGAAGCAGCCGAGGCTGAGGGAGGAGGGACCATGGCATCAATTGCAAATCCTCGTAGAACTGCAAAgta-gctaccttgaactg--atttccaagattgattagtatctctccacttgatgttgattatctctccccattctgatctggacattgggattccatacatctgtcctgacatgttgtatacttaactgtccttgaaggggatgcaatgcattacatgatgttgattgaatccttattctctgcag