Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGACTGATCAAATGCAGGACACATTAAATTGCAAGAAAAAGGGAGATGTTGCATTTCGGCAGAAAGATTTTAGACTGGCAATTGAGTGCTACTCGCAGgtagagtagtaatgttgaaaagttggactagtctaaatttggctttccctttttattttattttattgaaaacctgctgaatgctgattaaaacttatgt...

Basic information

species Glycine max
transcript GLYMA03G01300.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G01300.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv15s0046g02900.t01 (Vitis vinifera), 5'ss of exon 10
GTGGACTGATCAAATGCAGGACACATTAAATTGCAAGAAAAAGGGAGATGTTGCATTTCGGCAGAAAGATTTTAGACTGGCAATTGAGTGCTACTCGCAGgtagagtagtaatgttgaaaagttggactagtctaaatttggctttccctttttattttattttattgaaaacctgctgaatgctgattaaaacttatgt---
||||||||||||||||||||| ||||||||||  |||||||| || |||| ||| || ||||| || ||||| |||   || ||||| || ||  | |||||    |  |     ||  | ||| | | |  ||   |||    ||| ||| |   |  | |||   |  | | |  |   |    |||      | |     
GTGGACTGATCAAATGCAGGAGACATTAAATTCTAAGAAAAAAGGTGATGCTGCTTTCCGGCAAAAGGATTTCAGAGCTGCCATTGACTGTTATACACAGgttagtttctgtctatgccatgtttg-ccaccctt--tttattgttcacttctacatgcaatttgcagttatctttttttctctatattttcttctttccttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9983350|gb|BE657458.1|BE657458
EST:     TTGCATTTCGGCAGAAAGATTTTAGACTGGCAATTGAGTGCTACTCGCAG                         TTCATAGATACTGGAACAATGGTTTCTCCAACAGTCTATGCACGGCGCAGT
genomic: TTGCATTTCGGCAGAAAGATTTTAGACTGGCAATTGAGTGCTACTCGCAGgtagagtagt ... ttatatgcagTTCATAGATACTGGAACAATGGTTTCTCCAACAGTCTATGCACGGCGCAGT
EST: gi|9984036|gb|BE658144.1|BE658144
EST:     TTGCATTTCGGCAGAAAGATTTTAGACTGGCAATTGAGTGCTACTCGCAG                         TTCATAGATACTGGAACAATGGTTTCTCCAACAGTCTATGCACGGCGCAGT
genomic: TTGCATTTCGGCAGAAAGATTTTAGACTGGCAATTGAGTGCTACTCGCAGgtagagtagt ... ttatatgcagTTCATAGATACTGGAACAATGGTTTCTCCAACAGTCTATGCACGGCGCAGT