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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCAGTGCCCAGAGTGCCAATGCAAAAATACCTGGGGAAGTTATGAATGCTCATGTAGTGATGGTTTGTTCTACGCACGAGAAAATGACATGTGTATTGgtgagggttattgttttttgaagttttctaattctttttgtatgccactttttaagactgccttactgcattagcagattttgtgtactcattaaagttt...

Basic information

species Glycine max
transcript GLYMA03G00510.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G00510.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G52850.1 (Arabidopsis thaliana), 5'ss of exon 10
TGCCAGTGCCCAGAGTGCCAATGCAAAAATACCTGGGGAAGTTATGAATGCTCATGTAGTGATGGTTTGTTCTACGCACGAGAAAATGACATGTGTATTGgtgagggttattgttttttgaagttttctaattctttttgtatgccactttttaagactgccttactgcattagcagattttgtgtactcattaaagttt
|||||||||||||||||  |||| ||||| || ||||||||||||||||||   || ||  | |||||| | |||   || ||  | ||||  || || ||| |  |  || | | ||      |        | |  |  ||      |  | |  | | ||| |||| ||     || | ||| |    |        
TGCCAGTGCCCAGAGTGTAAATGTAAAAACACTTGGGGAAGTTATGAATGCAGCTGCAGCAACGGTTTGCTTTACATGCGTGAGCACGACACTTGCATAGgtaaaagaaatagatcttccttcctcctagccccatacttaatttggagtcattaatcagactttctgcttt--tgaatctggtgaatgtgtag------

upper sequence: GLYMA03G00510.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv08s0058g01360.t01 (Vitis vinifera), 5'ss of exon 10
TGCCAGTGCCCAGAGTGCCAATGCAAAAATACCTGGGGAAGTTATGAATGCTCATGTAGTGATGGTTTGTTCTACGCACGAGAAAATGACATGTGTATTGgtgagggttattgttttttgaagttttctaatt--ctttttgtatgccactttttaagactgccttactgcattagcagattttgtgtact-cattaaagttt---
||| | || ||||||||| ||||||| |||||||||||||||||||| |||   || ||||    ||| || |||   |||||| |||||   |||||  |||||  ||     ||| ||||   ||||  ||  ||||||  |||  |   |   ||   |    |    | || |   |    |  ||  |  ||||       
TGCAATTGTCCAGAGTGCAAATGCAAGAATACCTGGGGAAGTTATGAGTGCAGCTGCAGTGGCAATTTATTGTACATGCGAGAACATGACGCCTGTATAAgtgagtatt-----tttctgaatgcttctgctttcctttttcgatgtaaggatcctagtgagaaagaa-ataataacctgtccaattcaccaccataaaacccaag