1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
AAGATGGCAAGATAGTAGGCGCTCTTCTAGTGCAAAAGAAGACATCAATGTTGTTCGTTGGGAACAGTGCAAACAGTTGCTGCAATCTGGAAAACATAAGgtacacaagcttccttttaggaaatgttatgtcaaggtgactgtgttgtttgctctgcaatatttgcacgggtattttgaaaattcagaagagcatgaat...
species | Glycine max |
transcript | GLYMA02G45610.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TTGTTCGTTGGGAACAGTGCAAACAGTTGCTGCAATCTGGAAAACATAAG GCACAAGGGCTGCGTCGGTGCATTGAAGAGATTGTGTTCTGCTTTACCTATEST: gi|208220404|gb|GE019836.1|GE019836
genomic: TTGTTCGTTGGGAACAGTGCAAACAGTTGCTGCAATCTGGAAAACATAAGgtacacaagc ... cttatcgtagGCACAAGGGCTGCGTCGGTGCATTGAAGAGATTGTGTTCTGCTTTACCTAT
EST: -TGTTCGTTGGGAACAGTGCAAACAGTTGCTGCAATCTGGAAAACATAAG GCACAAGGGCTGCGTCGGTGCATTGAAGAGATTGTGTTCTGCTTTACCTATEST: gi|4282637|gb|AI440556.1|AI440556
genomic: TTGTTCGTTGGGAACAGTGCAAACAGTTGCTGCAATCTGGAAAACATAAGgtacacaagc ... cttatcgtagGCACAAGGGCTGCGTCGGTGCATTGAAGAGATTGTGTTCTGCTTTACCTAT
EST: TTGTTCGTTGGGAACAGTGCAAACAGTTGCTGCAATCTGGAAAACATAAG GCACAAGGGCTGCGTCGGTGCATTGAAGAGAT-GTGTTCTGCEST: gi|193359948|gb|FK326720.1|FK326720
genomic: TTGTTCGTTGGGAACAGTGCAAACAGTTGCTGCAATCTGGAAAACATAAGgtacacaagc ... cttatcgtagGCACAAGGGCTGCGTCGGTGCATTGAAGAGATTGTGTTCTGC
EST: TTGTTCGTTGGGAACAGTGCAAACAGTTGCTGCAATCTGGAAAACATAAG GCACAAGGGCTGCGTCGGTGCATTGAAGAGATTGTGTTCTGCTTTACCTATEST: gi|298181814|gb|HO025989.1|HO025989
genomic: TTGTTCGTTGGGAACAGTGCAAACAGTTGCTGCAATCTGGAAAACATAAGgtacacaagc ... cttatcgtagGCACAAGGGCTGCGTCGGTGCATTGAAGAGATTGTGTTCTGCTTTACCTAT
EST: TTGTTCGTTGGGAACAGTGCAAACAGTTGCTGCAATCTGGAAAACATAAG GCACAAGGGCTGCGTCGGTGCATTGAAGAGATTGTGTTCTGCTTTACCTATEST: gi|208122469|gb|GD921803.1|GD921803
genomic: TTGTTCGTTGGGAACAGTGCAAACAGTTGCTGCAATCTGGAAAACATAAGgtacacaagc ... cttatcgtagGCACAAGGGCTGCGTCGGTGCATTGAAGAGATTGTGTTCTGCTTTACCTAT
EST: TTGTTCGTTGGGAACAGTGCAAACAGTTGCTGCAATCTGGAAAACATAAG GCACAAGGGCTGCGTCGGTGCATTGAAGAGATTGTAGTTACTGCTTTACCTEST: gi|208179591|gb|GD973594.1|GD973594
genomic: TTGTTCGTTGGGAACAGTGCAAACAGTTGCTGCAATCTGGAAAACATAAGgtacacaagc ... cttatcgtagGCACAAGGGCTGCGTCGGTGCATTGAAGAGATTGT-GTT-CTGCTTTACCT
EST: TTGTTCGTTGGGAACAGTGCAAACAGTTGCTGCAATCTGGAAAACATAAG GCACAAGGGCTGCGTCGGTGCATTGAAGAGATTGTGTTCTGCTTTACCTATEST: gi|151404405|gb|EV274215.1|EV274215
genomic: TTGTTCGTTGGGAACAGTGCAAACAGTTGCTGCAATCTGGAAAACATAAGgtacacaagc ... cttatcgtagGCACAAGGGCTGCGTCGGTGCATTGAAGAGATTGTGTTCTGCTTTACCTAT
EST: TTGTTCGTTGGGAACAGTGCAAACAGTTGCTGCAATCTGGAAAACATAAG GCACAAGGGCTGCGTCGGTGCATTGAAGAGATTGTGTTCTGCTTTACCTATEST: gi|58023254|gb|CX709995.1|CX709995
genomic: TTGTTCGTTGGGAACAGTGCAAACAGTTGCTGCAATCTGGAAAACATAAGgtacacaagc ... cttatcgtagGCACAAGGGCTGCGTCGGTGCATTGAAGAGATTGTGTTCTGCTTTACCTAT
EST: TTGTTCGTTGGGAACAGTGCAAACAGTTGCTGCAATCTGGAAAACATAAG GCACAAGGGCTGCGTCGGTGCATTGAAGAGATTGTGTTCTGCTTTACCTATEST: gi|19271087|gb|BM887343.1|BM887343
genomic: TTGTTCGTTGGGAACAGTGCAAACAGTTGCTGCAATCTGGAAAACATAAGgtacacaagc ... cttatcgtagGCACAAGGGCTGCGTCGGTGCATTGAAGAGATTGTGTTCTGCTTTACCTAT
EST: TTGTTCGTTGGGAACAGTGCAAACAGTTGCTGCAATCTGGAAAACATAAG GCACAAGGGCTGCGTCGGTGCATTGAAGAGATTGTGTTCTGCTTTACCTATEST: gi|207792263|gb|GD764169.1|GD764169
genomic: TTGTTCGTTGGGAACAGTGCAAACAGTTGCTGCAATCTGGAAAACATAAGgtacacaagc ... cttatcgtagGCACAAGGGCTGCGTCGGTGCATTGAAGAGATTGTGTTCTGCTTTACCTAT
EST: TTGTTCGTTGGGAACAGTGCAAACAGTTGCTGCAATCTGGAAAACATAAG GCACAAGGGCTGCGTCGGTGCATTGAAGAGATTGTGTTCTGCTTTACCTAT
genomic: TTGTTCGTTGGGAACAGTGCAAACAGTTGCTGCAATCTGGAAAACATAAGgtacacaagc ... cttatcgtagGCACAAGGGCTGCGTCGGTGCATTGAAGAGATTGTGTTCTGCTTTACCTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGATGGCAAGATAGTAGGCGCTCTTCTAGTGCAAAAGAAGACATCAATGTTGTTCGTTGGGAACAGTGCAAACAGTTGCTGCAATCTGGAAAACATAAGgtacacaagcttccttttaggaaatgttatgtcaaggtgactgtgttgtttgctctgcaatatttgcacgggtattttgaaaattcagaagagcatgaat
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