Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTTCTTACTTGGCCTTGTGTATGCTGTAGTCACACCATTTCTACTTCCATACATCATAGTGTTCTTTGGCTTGGCATATGTCGTCTACCGTCATCAGgtaaaagttagctcatgaaaggtcttctgtttcaatgcaatttaatctttgtttttacaaactgaccatagacacgagaaattttaaggatgaatatttactatgtattattcaatcttcaacaattgaatattttgttatgtagcataatgcctgaaatctaaatggcag

Basic information

species Glycine max
transcript GLYMA02G43910.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G43910.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os05g51630.1 (Oryza sativa), 5'ss of exon 10
GTATTTCTTACTTGGCCTTGTGTATGCTGTAGTCACACCATTTCTACTTCCATACATCATAGTGTTCTTTGGCTTGGCATATGTCGTCTACCGTCATCAGgtaaaagttagctcatgaaaggtcttctgtttcaatgcaatttaatctttgtttttacaaactgaccatagacacgagaaattttaaggatgaatatttactatgtattattcaatcttcaacaattgaatattttgttatgtagcataatgcctgaaatctaaatggcag
 |||||||||||||||||||| |||||||| || ||||| ||  | ||||| | |||  | || ||||| ||  |||||||||| |||||||| || |||||||     |   ||      |     ||    |||   |||   | ||   |||||   | |||  ||        ||| |  |||    |  |  ||  |||| | |||| |  |                                                      
ATATTTCTTACTTGGCCTTGTCTATGCTGTGGTGACACCGTTATTGCTTCCTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAGgtaaggaccactgca------gctacttgcgagaattttatt--gtgttaagtttta---agtgattatgat-----gaactactaaattagcttgctttgtatg-actatttagac------------------------------------------------------

upper sequence: GLYMA02G43910.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv12s0059g01090.t01 (Vitis vinifera), 5'ss of exon 9
GTATTTCTTACTTGGCCTTGTGTATGCTGTAGTCACACCATTTCTACTTCCATACATCATAGTGTTCTTTGGCTTGGCATATGTCGTCTACCGTCATCAGgtaaaagttagc--tcatgaaaggtcttctg------tttcaatgcaatttaatctttgtttt--tacaaactgaccatagacacgagaaattttaag----------gatgaatatttactatgtattattcaatcttcaacaattgaat---attttgttatgtagcataatgcctgaaatctaaatggcag
 ||||||||||||||||| || ||||| || ||||| ||  || ||||||| | ||| ||||| ||||| |||||||||||||| || |  |||||||||||||||||| |   || |  |   |  | ||      | ||     |   ||||| |  |||   | |  | |     || |    ||   |||| ||          ||     || |   ||||| |||   ||||    |   |       | ||  || | ||  | |||  |||     ||  | |   
CTATTTCTTACTTGGCCTCGTTTATGCCGTGGTCACCCCCATTTTACTTCCTTTCATAATAGTATTCTTCGGCTTGGCATATGTTGTATTTCGTCATCAGgtaaaagttggtattccttcacatttgtgtggaggaatctcctcctaccctaatcatattttccctgcccagttgttttacagtatagtgtttttcagttggtggttggaaaggaatctctgatgtaatatattatctctgtcctctctgcccaaattctttctctaataaaatttctggtggatatgtag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18721745|gb|BM523359.1|BM523359
EST:     CATACATCATAGTGTTCTTTGGCTTGGCATATGTCGTCTACCGTCATCAG                         ATTATTAATGTCTACAACCAAGAGTATGAGAGTGCTGCAGCATTCTGGCCT
genomic: CATACATCATAGTGTTCTTTGGCTTGGCATATGTCGTCTACCGTCATCAGgtaaaagtta ... taaatggcagATTATTAATGTCTACAACCAAGAGTATGAGAGTGCTGCAGCATTCTGGCCT
EST: gi|209701365|gb|BW655961.1|BW655961
EST:     CATACATCATAGTGTTCTTTGGCTTGGCATATGTCGTCTACCGTCATCAG                         ATTATTAATGTCTACAACCAAGAGTATGAGAGTGCTGCAGCATTCTGGCCT
genomic: CATACATCATAGTGTTCTTTGGCTTGGCATATGTCGTCTACCGTCATCAGgtaaaagtta ... taaatggcagATTATTAATGTCTACAACCAAGAGTATGAGAGTGCTGCAGCATTCTGGCCT
EST: gi|31463488|gb|CD405516.1|CD405516
EST:     TATGTCGTCAACCGTCATCAG                         ATTATTAATGTCTACAACCAAGAGTATGAGAGTGCTGCAGCATTCTGGCCT
genomic: TATGTCGTCTACCGTCATCAGgtaaaagtta ... taaatggcagATTATTAATGTCTACAACCAAGAGTATGAGAGTGCTGCAGCATTCTGGCCT