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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTGGTGCACTAATCAGGAAGCTAGTGTTCTAAATATAGACATGAAAGCAAACATATGTTGTGTCAAATATAATCCTGGATCTGGCAATTATATTGCAgtaagtacctttcattcagttaaaacttagaagagaatatctggatttagttcactctagatatgatcctatccatgttttatcttgtgtctatcattca...

Basic information

species Glycine max
transcript GLYMA02G43540.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G43540.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G32950.1 (Arabidopsis thaliana), 5'ss of exon 10
AATTTGGTGCACTAATCAGGAAGCTAGTGTTCTAAATATAGACATGAAAGCAAACATATGTTGTGTCAAATATAATCCTGGATCTGGCAATTATATTGCAgtaagtacctttcattcagttaaaacttagaagagaatatctg---gatttagttcactctagatatgatcctatc-catgttttatcttgtgtctatcattca------------------------------------------
| |||||||||| |  |||||||| |||||  | ||||| || |||||||||||||||||||||||||| || |||||||| ||  |||| || ||||| |||  ||| || ||    |    ||||| | |    | || |    | |     |||   |    ||||  ||||| || || |     | |     | | | |                                          
AGTTTGGTGCACGAGGCAGGAAGCAAGTGTGATTAATATTGATATGAAAGCAAACATATGTTGTGTCAAGTACAATCCTGGCTCAAGCAACTACATTGCGgtatatac-ttccac---gcctcaactttgcatctcacatttattcgctaccactcatgatcagcatgacactatcacacgtctctagatataatctttaattagatagagagacttagacgtttaagcctgttgacttatcacag

upper sequence: GLYMA02G43540.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv12s0059g01420.t01 (Vitis vinifera), 5'ss of exon 10
AATTTGGTGCACTAATCAGGAAGCTAGTGTTCTAAATATAGACATGAAAGCAAACATATGTTGTGTCAAATATAATCCTGGATCTGGCAATTATATTGCAgtaagtacctttcattcagttaaaacttagaagagaatatctggatttagttcactctagatatgatcctatccatgtttta-----tcttgtgtctatcattca
| |||||||||| || ||||| ||||| ||||| || || |||||||||||||| |||||||||||||| ||||||||||||||| ||| ||||||||| ||| |  ||| |     |  ||   |||  |  |   || |||   | |      | |  ||||  |||| || |    | |     |  || | | |   ||  
AGTTTGGTGCACAAACCAGGAGGCTAGCGTTCTTAACATTGACATGAAAGCAAATATATGTTGTGTCAAGTATAATCCTGGATCTAGCATTTATATTGCGgtatgctcctattccatacatatt-cttttattaatgtagctg---taaacctgttttgcatatattcctgtctaaacctgacaactttgtgaggccacagttt-

upper sequence: GLYMA02G43540.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S135_17V6.1 (Physcomitrella patens), 5'ss of exon 10
AATTTGGTGCACTAATCAGGAAGCTAGTGTTCTAAATATAGACATGAAAGCAAACATATGTTGTGTCAAATATAATCCTGGATCTGGCAATTATATTGCAgtaagtacctttcattcagttaaaact-tagaagagaatatctggatttagttcactctagatatgatcctatccatgttttatcttgtgtctatcattca-----------------------------------------------
 || |||||||| |  || ||  | || ||  |||||||||||||||| ||||| || || ||||| || ||||||||||||||  |||  ||| ||||||||||  |||  |||||    ||||      | |  | ||||    | ||      | ||    || ||   |  || ||| || ||    |    || |                                                
GATATGGTGCACGAGGCAAGAGTCAAGCGTGATAAATATAGACATGAAGGCAAATATTTGCTGTGTGAAGTATAATCCTGGATCAAGCAGCTATGTTGCAgtaagatcct--cattcctccaaaatgactcatgtcagtatccatttgtaccctcatttaatagtggtctactggatctttgattttccaacatgtataccttgggtttgtgctattaccttagattgtggatttcatctggttgcag

upper sequence: GLYMA02G43540.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S25_325V6.1 (Physcomitrella patens), 5'ss of exon 10
AATTTGGTGCACTAATCAGGAAGCTAGTGTTCTAAATATAGACATGAAAGCAAACATATGTTGTGTCAAATATAATCCTGGATCTGGCAATTATATTGCAgtaagtacctttca-ttcagttaaaacttagaaga-----gaatatctggatttagtt-cactctagatatga-----tcctatccatgttttatcttgtgtctatcattca------------------------------------------------------------------------------------
  ||||||||||||||||||| ||||||||| | | |||||||||||| || ||||| || || || || || |||||||| ||  ||||  ||||||| || |||     ||  |||| |  ||   | ||  |     | | | || ||| |  || || |||  ||||       |  | | |||||||| |    ||    |  |                                                                                       
GCTTTGGTGCACTAATCAGGAGGCTAGTGTTTTTAGTATAGACATGAAGGCCAACATCTGCTGCGTTAAGTACAATCCTGGTTCAAGCAACCATATTGCTgtgagttttggtctcttcaatataagtgtcgatcaccttggcaaacctcgatatttttacattctgtatatttgcactttgttttcatgtttttttgcatgatgtttgtgtgatgggacctactatttcattttgatataacttggtgagatcacggcctcttacttcactgtggcctttacggtactgtttgcag

upper sequence: GLYMA02G43540.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ20512 (Selaginella moellendorffii), 5'ss of exon 10
AATTTGGTGCACTAATCAGGAAGCTAGTGTTCTAAATATAGACATGAAAGCAAACATATGTTGTGTCAAATATAATCCTGGATCTGGCAATTATATTGCAgtaagtacctttcattcagttaaaact-tagaagagaatatctg-gatttagttcactctagatatgatcctatccatgttttatcttgtgtctatcattca
  | |||||||| |  |||||  | ||||| || || || |||||||| |||||||| || ||||||||||| ||||| |||||| |||||| | | || |||  |  ||||||   ||  |||| | | |  | |  |  | | |  || ||| ||| |   ||                                     
GCTGTGGTGCACCAGGCAGGAGACAAGTGTCCTGAACATTGACATGAAGGCAAACATTTGCTGTGTCAAATACAATCCCGGATCTAGCAATTTTGTCGCGgta--tttctttcaactagcaaaaattcttgttgtgtttgacagtgccttggtttactttttctag------------------------------------

upper sequence: GLYMA02G43540.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ28584 (Selaginella moellendorffii), 5'ss of exon 10
AATTTGGTGCACTAATCAGGAAGCTAGTGTTCTAAATATAGACATGAAAGCAAACATATGTTGTGTCAAATATAATCCTGGATCTGGCAATTATATTGCAgtaagtacctttcattcagttaaaact-tagaagagaatatctg-gatttagttcactctagatatgatcctatccatgttttatcttgtgtctatcattca
  | |||||||| |  |||||  | ||||| || || || |||||||| |||||||| || ||||||||||| ||||| |||||| |||||| | | || |||  |  ||||||   ||  || | | | |  | |  |  | | |  || ||| ||| |   ||                                     
GCTGTGGTGCACCAGGCAGGAGACAAGTGTCCTGAACATTGACATGAAGGCAAACATTTGCTGTGTCAAATACAATCCCGGATCTAGCAATTTTGTCGCGgta--tttctttcaactagcaaagattcttgttgtgtttgacagtgcctttgtttactttttctag------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10845545|gb|BF068639.1|BF068639
EST:     CAAACATATGTTGTGTCAAATATAATCCTGGATCTGGCAATTATATTGCA                         GTTGGGTCAGCAGACCATCATATCCATTATTATGATTTGAGAAATATTAGC
genomic: CAAACATATGTTGTGTCAAATATAATCCTGGATCTGGCAATTATATTGCAgtaagtacct ... atttttgcagGTTGGGTCAGCAGACCATCATATCCATTATTATGATTTGAGAAATATTAGC